G2_using_S5

Super-paramagnetic Clustering of 19 points in a 73 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=3)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    13 201426_s_atVIM Chr:10p13
    25 201798_s_atFER1L3 Chr:10q24
    317 221773_atELK3 Chr:12q23
    415 214853_s_atSHC1 Chr:1q21
    519 228141_at--- ---
    612 210427_x_atANXA2 Chr:15q21-q22
    714 213503_x_atANXA2 Chr:15q21-q22
    84 201590_x_atANXA2 Chr:15q21-q22
    911 208816_x_atANXA2P1 Chr:4q21-q31
    102 201028_s_atCD99 Chr:xp22.32; yp11.3
    119 208659_atCLIC1 Chr:6p22.1-p21.2
    1218 226621_atFGG Chr:4q28
    1310 208747_s_atC1S Chr:12p13
    1413 212067_s_atC1R Chr:12p13
    151 200986_atSERPING1 Chr:11q12-q13.1
    1616 218983_atC1RL Chr:12p13.31
    178 207808_s_atPROS1 Chr:3q11.2
    186 203854_atIF Chr:4q25
    197 204646_atDPYD Chr:1p22

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156470.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217094bis.cel
    226890.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306580.cel
    3140300.cel
    326993.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5773ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626683.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687197.cel
    6941323.cel
    706365R.cel
    716784.cel
    7272ge197.cel
    7356528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)3
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 00:31:07