G2_using_S4

Super-paramagnetic Clustering of 19 points in a 69 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=3)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    110 208747_s_atC1S Chr:12p13
    213 212067_s_atC1R Chr:12p13
    318 226621_atFGG Chr:4q28
    46 203854_atIF Chr:4q25
    58 207808_s_atPROS1 Chr:3q11.2
    67 204646_atDPYD Chr:1p22
    716 218983_atC1RL Chr:12p13.31
    81 200986_atSERPING1 Chr:11q12-q13.1
    93 201426_s_atVIM Chr:10p13
    1015 214853_s_atSHC1 Chr:1q21
    1117 221773_atELK3 Chr:12q23
    1219 228141_at--- ---
    1311 208816_x_atANXA2P1 Chr:4q21-q31
    1412 210427_x_atANXA2 Chr:15q21-q22
    1514 213503_x_atANXA2 Chr:15q21-q22
    164 201590_x_atANXA2 Chr:15q21-q22
    175 201798_s_atFER1L3 Chr:10q24
    182 201028_s_atCD99 Chr:xp22.32; yp11.3
    199 208659_atCLIC1 Chr:6p22.1-p21.2

    Samples Names

    12104.cel
    281317.cel
    3412.cel
    43106.cel
    5111430.cel
    653547.cel
    758574.cel
    86129.cel
    930269.cel
    10101399.cel
    116070.cel
    12151497R.cel
    1331274.cel
    1418157.cel
    1542356bis.cel
    16221854R.cel
    176694bis.cel
    186490.cel
    19121437.cel
    2071308.cel
    2123190.cel
    2232283.cel
    231100R.cel
    2440345.cel
    251615.cel
    266180.cel
    2736300.cel
    286593.cel
    2928246.cel
    3029254.cel
    3126236.cel
    3234288.cel
    3346428.cel
    3417155R.cel
    3543360.cel
    3656566.cel
    37131453.cel
    38201621.cel
    3933284.cel
    4038328.cel
    4191360.cel
    4241349.cel
    43211622R.cel
    4424218.cel
    4547444.cel
    4627242.cel
    4744390.cel
    4850506.cel
    4951527.cel
    5055563.cel
    5119159.cel
    523530.cel
    5369ge205.cel
    5448458.cel
    5554558.cel
    5639344.cel
    5749461.cel
    586283.cel
    5914147.cel
    6025222.cel
    6151284.cel
    6245396.cel
    635757.cel
    646797.cel
    6537323.cel
    665965R.cel
    676384.cel
    6868ge197.cel
    6952528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)3
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 00:30:54