G2_using_S3

Super-paramagnetic Clustering of 19 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=4)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	6		203854_at		IF Chr:4q25
2	10		208747_s_at		C1S Chr:12p13
3	12		210427_x_at		ANXA2 Chr:15q21-q22
4	14		213503_x_at		ANXA2 Chr:15q21-q22
5	17		221773_at		ELK3 Chr:12q23
6	4		201590_x_at		ANXA2 Chr:15q21-q22
7	8		207808_s_at		PROS1 Chr:3q11.2
8	5		201798_s_at		FER1L3 Chr:10q24
9	11		208816_x_at		ANXA2P1 Chr:4q21-q31
10	7		204646_at		DPYD Chr:1p22
11	13		212067_s_at		C1R Chr:12p13
12	15		214853_s_at		SHC1 Chr:1q21
13	3		201426_s_at		VIM Chr:10p13
14	18		226621_at		FGG Chr:4q28
15	9		208659_at		CLIC1 Chr:6p22.1-p21.2
16	2		201028_s_at		CD99 Chr:xp22.32; yp11.3
17	1		200986_at		SERPING1 Chr:11q12-q13.1
18	16		218983_at		C1RL Chr:12p13.31
19	19		228141_at		--- ---

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:30:42