G29_using_S5

Super-paramagnetic Clustering of 101 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	1		201014_s_at	PAICS Chr:4pter-q21
2	60	G418	218662_s_at	HCAP-G Chr:4p16-p15
3	61	G418	218663_at	HCAP-G Chr:4p16-p15
4	14	G418	203362_s_at	MAD2L1 Chr:4q27
5	63	G418	218875_s_at	FBXO5 Chr:6q25-q26
6	68	G418	219787_s_at	ECT2 Chr:3q26.1-q26.2
7	2	G418	201291_s_at	TOP2A Chr:17q21-q22
8	12	G418	203213_at	CDC2 Chr:10q21.1
9	3	G418	201292_at	TOP2A Chr:17q21-q22
10	31	G418	204825_at	MELK Chr:9p13.1
11	65	G418	219148_at	TOPK Chr:8p21.2
12	23	G418	204162_at	KNTC2 Chr:18p11.31
13	64	G418	218883_s_at	KLIP1 Chr:4q35.1
14	22	G418	204146_at	PIR51 Chr:12p13.2-p13.1
15	24	G418	204170_s_at	CKS2 Chr:9q22
16	77	G418	222848_at	FKSG14 Chr:5p15.2-q12.3
17	84	G418	225834_at	MGC57827 ---
18	7	G418	202503_s_at	KIAA0101 Chr:15q22.1
19	49	G418	213007_at	FLJ10719 Chr:15q25-q26
20	93	G418	229305_at	KLIP1 Chr:4q35.1
21	100	G418	238756_at	LOC283431 Chr:12q23.3
22	45	G418	209773_s_at	RRM2 Chr:2p25-p24
23	4	G418	201890_at	RRM2 Chr:2p25-p24
24	17	G418	203755_at	BUB1B Chr:15q15
25	56	G418	218039_at	NUSAP1 Chr:15q14
26	10	G418	202705_at	CCNB2 Chr:15q21.3
27	20	G418	204026_s_at	ZWINT Chr:10q21-q22
28	47	G418	210559_s_at	CDC2 Chr:10q21.1
29	41	G418	208079_s_at	STK6 Chr:20q13.2-q13.3
30	90	G418	228273_at	FLJ11029 Chr:17q23.2
31	55	G418	218009_s_at	PRC1 Chr:15q26.1
32	53	G418	214710_s_at	CCNB1 Chr:5q12
33	92	G418	228729_at	CCNB1 Chr:5q12
34	26	G418	204244_s_at	ASK Chr:7q21.3
35	50	G418	213226_at	PMSCL1 Chr:4q27
36	86	G418	226980_at	XTP1 Chr:5q12.1
37	40	G418	207828_s_at	CENPF Chr:1q32-q41
38	43	G418	209172_s_at	CENPF Chr:1q32-q41
39	57	G418	218355_at	KIF4A Chr:xq13.1
40	8	G418	202580_x_at	FOXM1 Chr:12p13
41	29	G418	204641_at	NEK2 Chr:1q32.2-q41
42	99	G418	236641_at	KIF14 Chr:1pter-q31.3
43	59	G418	218585_s_at	RAMP Chr:1q32.1-q32.2
44	74	G418	222680_s_at	RAMP Chr:1q32.1-q32.2
45	9	G418	202589_at	TYMS Chr:18p11.32
46	96	G418	230165_at	SGOL2 Chr:2q33.2
47	62	G418	218755_at	KIF20A Chr:5q31
48	94	G418	229490_s_at	IQGAP3 Chr:1q23.1
49	15	G418	203554_x_at	PTTG1 Chr:5q35.1
50	79	G418	223381_at	CDCA1 Chr:1q23.2
51	69	G418	219918_s_at	ASPM Chr:1q31
52	27	G418	204444_at	KIF11 Chr:10q24.1
53	34	G418	205046_at	CENPE Chr:4q24-q25
54	46	G418	210052_s_at	TPX2 Chr:20q11.2
55	11	G418	202870_s_at	CDC20 Chr:1p34.1
56	32	G418	204962_s_at	CENPA Chr:2p24-p21
57	44	G418	209642_at	BUB1 Chr:2q14
58	66	G418	219306_at	KNSL7 Chr:3p21.32
59	75	G418	222740_at	ATAD2 Chr:8q24.13
60	37	G418	206102_at	KIAA0186 Chr:20p11.21
61	18	G418	203764_at	DLG7 Chr:14q22.2
62	25	G418	204240_s_at	SMC2L1 Chr:9q31.2
63	101	G418	242560_at	FANCD2 Chr:3p26
64	21	G418	204033_at	TRIP13 Chr:5p15.33
65	13	G418	203358_s_at	EZH2 Chr:7q35-q36
66	42	G418	208808_s_at	HMGB2 Chr:4q31
67	16	G418	203560_at	GGH Chr:8q12.2
68	78	G418	223229_at	HSPC150 Chr:1q32.1
69	87	G418	227249_at	NDE1 Chr:16p13.11
70	30	G418	204822_at	TTK Chr:6q13-q21
71	81	G418	224428_s_at	CDCA7 Chr:2q31
72	85	G418	226319_s_at	THOC4 Chr:17q25.3
73	54	G418	216237_s_at	MCM5 Chr:22q13.1
74	89	G418	228033_at	E2F7 Chr:12q21.1
75	98	G418	235425_at	SGOL2 Chr:2q33.2
76	38	G418	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
77	28	G418	204510_at	CDC7 Chr:1p22
78	88	G418	227350_at	--- ---
79	73	G418	222077_s_at	RACGAP1 Chr:12q13.12
80	72	G418	222039_at	LOC146909 Chr:17q21.31
81	91	G418	228323_at	AF15Q14 Chr:15q14
82	33	G418	205034_at	CCNE2 Chr:8q22.1
83	95	G418	229551_x_at	ZNF367 Chr:9q22
84	51	G418	213906_at	MYBL1 Chr:8q22
85	70	G418	220239_at	KLHL7 Chr:7p15.3
86	67	G418	219493_at	SHCBP1 Chr:16q11.2
87	71	G418	221521_s_at	Pfs2 Chr:16q24.1
88	19		204023_at	RFC4 Chr:3q27
89	35		205394_at	CHEK1 Chr:11q24-q24
90	5		202107_s_at	MCM2 Chr:3q21
91	48		210983_s_at	MCM7 Chr:7q21.3-q22.1
92	76		222843_at	FIGNL1 Chr:7p12.2
93	36		205967_at	HIST1H4C Chr:6p21.3
94	82		225081_s_at	RAM2 Chr:7p15.3
95	83		225655_at	UHRF1 Chr:19p13.3
96	39		207165_at	HMMR Chr:5q33.2-qter
97	58		218542_at	C10orf3 Chr:10q23.33
98	97		232315_at	LOC400713 Chr:19q13.41
99	80		223748_at	SLC4A11 Chr:20p12
100	6		202421_at	IGSF3 Chr:1p13
101	52		214235_at	CYP3A5 Chr:7q21.1

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:45:29

G29_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC