G29_using_S4

Super-paramagnetic Clustering of 101 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	1		201014_s_at	PAICS Chr:4pter-q21
2	60	G417	218662_s_at	HCAP-G Chr:4p16-p15
3	61	G417	218663_at	HCAP-G Chr:4p16-p15
4	20	G416 G417	204026_s_at	ZWINT Chr:10q21-q22
5	17	G416 G417	203755_at	BUB1B Chr:15q15
6	2	G416 G417	201291_s_at	TOP2A Chr:17q21-q22
7	27	G416 G417	204444_at	KIF11 Chr:10q24.1
8	3	G416 G417	201292_at	TOP2A Chr:17q21-q22
9	56	G416 G417	218039_at	NUSAP1 Chr:15q14
10	69	G416 G417	219918_s_at	ASPM Chr:1q31
11	64	G416 G417	218883_s_at	KLIP1 Chr:4q35.1
12	79	G416 G417	223381_at	CDCA1 Chr:1q23.2
13	99	G416 G417	236641_at	KIF14 Chr:1pter-q31.3
14	40	G416 G417	207828_s_at	CENPF Chr:1q32-q41
15	43	G416 G417	209172_s_at	CENPF Chr:1q32-q41
16	57	G416 G417	218355_at	KIF4A Chr:xq13.1
17	29	G416 G417	204641_at	NEK2 Chr:1q32.2-q41
18	13	G416 G417	203358_s_at	EZH2 Chr:7q35-q36
19	44	G416 G417	209642_at	BUB1 Chr:2q14
20	74	G416 G417	222680_s_at	RAMP Chr:1q32.1-q32.2
21	59	G416 G417	218585_s_at	RAMP Chr:1q32.1-q32.2
22	4	G416 G417	201890_at	RRM2 Chr:2p25-p24
23	34	G416 G417	205046_at	CENPE Chr:4q24-q25
24	86	G416 G417	226980_at	XTP1 Chr:5q12.1
25	14	G416 G417	203362_s_at	MAD2L1 Chr:4q27
26	63	G416 G417	218875_s_at	FBXO5 Chr:6q25-q26
27	68	G416 G417	219787_s_at	ECT2 Chr:3q26.1-q26.2
28	26	G416 G417	204244_s_at	ASK Chr:7q21.3
29	55	G416 G417	218009_s_at	PRC1 Chr:15q26.1
30	10	G416 G417	202705_at	CCNB2 Chr:15q21.3
31	41	G416 G417	208079_s_at	STK6 Chr:20q13.2-q13.3
32	90	G416 G417	228273_at	FLJ11029 Chr:17q23.2
33	46	G416 G417	210052_s_at	TPX2 Chr:20q11.2
34	30	G416 G417	204822_at	TTK Chr:6q13-q21
35	32	G416 G417	204962_s_at	CENPA Chr:2p24-p21
36	53	G416 G417	214710_s_at	CCNB1 Chr:5q12
37	24	G416 G417	204170_s_at	CKS2 Chr:9q22
38	92	G416 G417	228729_at	CCNB1 Chr:5q12
39	12	G416 G417	203213_at	CDC2 Chr:10q21.1
40	47	G416 G417	210559_s_at	CDC2 Chr:10q21.1
41	65	G416 G417	219148_at	TOPK Chr:8p21.2
42	15	G416 G417	203554_x_at	PTTG1 Chr:5q35.1
43	22	G416 G417	204146_at	PIR51 Chr:12p13.2-p13.1
44	23	G416 G417	204162_at	KNTC2 Chr:18p11.31
45	31	G416 G417	204825_at	MELK Chr:9p13.1
46	50	G416 G417	213226_at	PMSCL1 Chr:4q27
47	96	G416 G417	230165_at	SGOL2 Chr:2q33.2
48	25	G416 G417	204240_s_at	SMC2L1 Chr:9q31.2
49	11	G416 G417	202870_s_at	CDC20 Chr:1p34.1
50	45	G416 G417	209773_s_at	RRM2 Chr:2p25-p24
51	94	G416 G417	229490_s_at	IQGAP3 Chr:1q23.1
52	18	G416 G417	203764_at	DLG7 Chr:14q22.2
53	8	G416 G417	202580_x_at	FOXM1 Chr:12p13
54	66	G416 G417	219306_at	KNSL7 Chr:3p21.32
55	62	G416 G417	218755_at	KIF20A Chr:5q31
56	78	G417	223229_at	HSPC150 Chr:1q32.1
57	91	G417	228323_at	AF15Q14 Chr:15q14
58	93	G417	229305_at	KLIP1 Chr:4q35.1
59	37	G417	206102_at	KIAA0186 Chr:20p11.21
60	67	G417	219493_at	SHCBP1 Chr:16q11.2
61	71	G417	221521_s_at	Pfs2 Chr:16q24.1
62	100	G417	238756_at	LOC283431 Chr:12q23.3
63	101	G417	242560_at	FANCD2 Chr:3p26
64	9	G417	202589_at	TYMS Chr:18p11.32
65	84	G417	225834_at	MGC57827 ---
66	21	G417	204033_at	TRIP13 Chr:5p15.33
67	42	G417	208808_s_at	HMGB2 Chr:4q31
68	48	G417	210983_s_at	MCM7 Chr:7q21.3-q22.1
69	54	G417	216237_s_at	MCM5 Chr:22q13.1
70	87	G417	227249_at	NDE1 Chr:16p13.11
71	16	G417	203560_at	GGH Chr:8q12.2
72	85	G417	226319_s_at	THOC4 Chr:17q25.3
73	75	G417	222740_at	ATAD2 Chr:8q24.13
74	95	G417	229551_x_at	ZNF367 Chr:9q22
75	98	G417	235425_at	SGOL2 Chr:2q33.2
76	33	G417	205034_at	CCNE2 Chr:8q22.1
77	19		204023_at	RFC4 Chr:3q27
78	5		202107_s_at	MCM2 Chr:3q21
79	35		205394_at	CHEK1 Chr:11q24-q24
80	72		222039_at	LOC146909 Chr:17q21.31
81	73		222077_s_at	RACGAP1 Chr:12q13.12
82	82		225081_s_at	RAM2 Chr:7p15.3
83	77		222848_at	FKSG14 Chr:5p15.2-q12.3
84	89		228033_at	E2F7 Chr:12q21.1
85	38		206632_s_at	APOBEC3B Chr:22q13.1-q13.2
86	7		202503_s_at	KIAA0101 Chr:15q22.1
87	49		213007_at	FLJ10719 Chr:15q25-q26
88	36		205967_at	HIST1H4C Chr:6p21.3
89	81		224428_s_at	CDCA7 Chr:2q31
90	76		222843_at	FIGNL1 Chr:7p12.2
91	83		225655_at	UHRF1 Chr:19p13.3
92	51		213906_at	MYBL1 Chr:8q22
93	28		204510_at	CDC7 Chr:1p22
94	88		227350_at	--- ---
95	70		220239_at	KLHL7 Chr:7p15.3
96	39		207165_at	HMMR Chr:5q33.2-qter
97	58		218542_at	C10orf3 Chr:10q23.33
98	97		232315_at	LOC400713 Chr:19q13.41
99	80		223748_at	SLC4A11 Chr:20p12
100	6		202421_at	IGSF3 Chr:1p13
101	52		214235_at	CYP3A5 Chr:7q21.1

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:41:55

G29_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC