G29_using_S3

Super-paramagnetic Clustering of 101 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	86		226980_at	XTP1 Chr:5q12.1
2	98		235425_at	SGOL2 Chr:2q33.2
3	1		201014_s_at	PAICS Chr:4pter-q21
4	87		227249_at	NDE1 Chr:16p13.11
5	81		224428_s_at	CDCA7 Chr:2q31
6	9		202589_at	TYMS Chr:18p11.32
7	93		229305_at	KLIP1 Chr:4q35.1
8	61		218663_at	HCAP-G Chr:4p16-p15
9	71		221521_s_at	Pfs2 Chr:16q24.1
10	26		204244_s_at	ASK Chr:7q21.3
11	11		202870_s_at	CDC20 Chr:1p34.1
12	6		202421_at	IGSF3 Chr:1p13
13	40		207828_s_at	CENPF Chr:1q32-q41
14	83		225655_at	UHRF1 Chr:19p13.3
15	97		232315_at	LOC400713 Chr:19q13.41
16	69		219918_s_at	ASPM Chr:1q31
17	15		203554_x_at	PTTG1 Chr:5q35.1
18	58		218542_at	C10orf3 Chr:10q23.33
19	33		205034_at	CCNE2 Chr:8q22.1
20	41		208079_s_at	STK6 Chr:20q13.2-q13.3
21	53		214710_s_at	CCNB1 Chr:5q12
22	55		218009_s_at	PRC1 Chr:15q26.1
23	13		203358_s_at	EZH2 Chr:7q35-q36
24	17	G415	203755_at	BUB1B Chr:15q15
25	18	G415	203764_at	DLG7 Chr:14q22.2
26	94	G415	229490_s_at	IQGAP3 Chr:1q23.1
27	62	G415	218755_at	KIF20A Chr:5q31
28	60	G415	218662_s_at	HCAP-G Chr:4p16-p15
29	35	G412 G415	205394_at	CHEK1 Chr:11q24-q24
30	12	G412 G415	203213_at	CDC2 Chr:10q21.1
31	7	G412 G415	202503_s_at	KIAA0101 Chr:15q22.1
32	23	G412 G415	204162_at	KNTC2 Chr:18p11.31
33	64	G412 G415	218883_s_at	KLIP1 Chr:4q35.1
34	4	G412 G415	201890_at	RRM2 Chr:2p25-p24
35	10	G412 G415	202705_at	CCNB2 Chr:15q21.3
36	84	G412 G415	225834_at	MGC57827 ---
37	2	G412 G415	201291_s_at	TOP2A Chr:17q21-q22
38	3	G412 G415	201292_at	TOP2A Chr:17q21-q22
39	32	G412 G415	204962_s_at	CENPA Chr:2p24-p21
40	99	G412 G415	236641_at	KIF14 Chr:1pter-q31.3
41	38	G412 G415	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
42	77	G412 G415	222848_at	FKSG14 Chr:5p15.2-q12.3
43	36	G412 G415	205967_at	HIST1H4C Chr:6p21.3
44	91	G412 G415	228323_at	AF15Q14 Chr:15q14
45	50	G412 G415	213226_at	PMSCL1 Chr:4q27
46	52	G412 G415	214235_at	CYP3A5 Chr:7q21.1
47	57	G412 G415	218355_at	KIF4A Chr:xq13.1
48	80	G412 G415	223748_at	SLC4A11 Chr:20p12
49	44	G415	209642_at	BUB1 Chr:2q14
50	45	G415	209773_s_at	RRM2 Chr:2p25-p24
51	16	G411 G413 G414	203560_at	GGH Chr:8q12.2
52	79	G411 G413 G414	223381_at	CDCA1 Chr:1q23.2
53	31	G411 G413 G414	204825_at	MELK Chr:9p13.1
54	37	G411 G413 G414	206102_at	KIAA0186 Chr:20p11.21
55	14	G411 G413 G414	203362_s_at	MAD2L1 Chr:4q27
56	68	G411 G413 G414	219787_s_at	ECT2 Chr:3q26.1-q26.2
57	92	G411 G413 G414	228729_at	CCNB1 Chr:5q12
58	66	G411 G413 G414	219306_at	KNSL7 Chr:3p21.32
59	34	G411 G413 G414	205046_at	CENPE Chr:4q24-q25
60	21	G411 G413 G414	204033_at	TRIP13 Chr:5p15.33
61	74	G411 G413 G414	222680_s_at	RAMP Chr:1q32.1-q32.2
62	75	G411 G413 G414	222740_at	ATAD2 Chr:8q24.13
63	78	G411 G413 G414	223229_at	HSPC150 Chr:1q32.1
64	29	G411 G413 G414	204641_at	NEK2 Chr:1q32.2-q41
65	43	G411 G413 G414	209172_s_at	CENPF Chr:1q32-q41
66	30	G411 G413 G414	204822_at	TTK Chr:6q13-q21
67	63	G411 G413 G414	218875_s_at	FBXO5 Chr:6q25-q26
68	89	G411 G413 G414	228033_at	E2F7 Chr:12q21.1
69	65	G411 G413 G414	219148_at	TOPK Chr:8p21.2
70	47	G413 G414	210559_s_at	CDC2 Chr:10q21.1
71	72	G413 G414	222039_at	LOC146909 Chr:17q21.31
72	20	G413 G414	204026_s_at	ZWINT Chr:10q21-q22
73	90	G413 G414	228273_at	FLJ11029 Chr:17q23.2
74	25	G414	204240_s_at	SMC2L1 Chr:9q31.2
75	39	G414	207165_at	HMMR Chr:5q33.2-qter
76	95	G414	229551_x_at	ZNF367 Chr:9q22
77	22	G414	204146_at	PIR51 Chr:12p13.2-p13.1
78	56	G414	218039_at	NUSAP1 Chr:15q14
79	76	G414	222843_at	FIGNL1 Chr:7p12.2
80	73	G414	222077_s_at	RACGAP1 Chr:12q13.12
81	8	G414	202580_x_at	FOXM1 Chr:12p13
82	100	G414	238756_at	LOC283431 Chr:12q23.3
83	46	G414	210052_s_at	TPX2 Chr:20q11.2
84	96	G414	230165_at	SGOL2 Chr:2q33.2
85	28		204510_at	CDC7 Chr:1p22
86	88		227350_at	--- ---
87	49		213007_at	FLJ10719 Chr:15q25-q26
88	101		242560_at	FANCD2 Chr:3p26
89	27		204444_at	KIF11 Chr:10q24.1
90	42		208808_s_at	HMGB2 Chr:4q31
91	82		225081_s_at	RAM2 Chr:7p15.3
92	19		204023_at	RFC4 Chr:3q27
93	24		204170_s_at	CKS2 Chr:9q22
94	51		213906_at	MYBL1 Chr:8q22
95	5		202107_s_at	MCM2 Chr:3q21
96	59		218585_s_at	RAMP Chr:1q32.1-q32.2
97	48		210983_s_at	MCM7 Chr:7q21.3-q22.1
98	54		216237_s_at	MCM5 Chr:22q13.1
99	67		219493_at	SHCBP1 Chr:16q11.2
100	85		226319_s_at	THOC4 Chr:17q25.3
101	70		220239_at	KLHL7 Chr:7p15.3

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:37:57

G29_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC