G29_using_S2

Super-paramagnetic Clustering of 101 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=29)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	1		201014_s_at	PAICS Chr:4pter-q21
2	42		208808_s_at	HMGB2 Chr:4q31
3	9		202589_at	TYMS Chr:18p11.32
4	24		204170_s_at	CKS2 Chr:9q22
5	26		204244_s_at	ASK Chr:7q21.3
6	34		205046_at	CENPE Chr:4q24-q25
7	48		210983_s_at	MCM7 Chr:7q21.3-q22.1
8	8	G410	202580_x_at	FOXM1 Chr:12p13
9	6	G410	202421_at	IGSF3 Chr:1p13
10	14	G410	203362_s_at	MAD2L1 Chr:4q27
11	22	G410	204146_at	PIR51 Chr:12p13.2-p13.1
12	38	G410	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
13	44	G410	209642_at	BUB1 Chr:2q14
14	37	G410	206102_at	KIAA0186 Chr:20p11.21
15	47	G410	210559_s_at	CDC2 Chr:10q21.1
16	43	G410	209172_s_at	CENPF Chr:1q32-q41
17	16	G410	203560_at	GGH Chr:8q12.2
18	35	G410	205394_at	CHEK1 Chr:11q24-q24
19	5	G410	202107_s_at	MCM2 Chr:3q21
20	19	G410	204023_at	RFC4 Chr:3q27
21	25	G410	204240_s_at	SMC2L1 Chr:9q31.2
22	10	G410	202705_at	CCNB2 Chr:15q21.3
23	31	G410	204825_at	MELK Chr:9p13.1
24	23	G410	204162_at	KNTC2 Chr:18p11.31
25	32	G410	204962_s_at	CENPA Chr:2p24-p21
26	57	G410	218355_at	KIF4A Chr:xq13.1
27	41	G410	208079_s_at	STK6 Chr:20q13.2-q13.3
28	12	G410	203213_at	CDC2 Chr:10q21.1
29	17	G410	203755_at	BUB1B Chr:15q15
30	13	G410	203358_s_at	EZH2 Chr:7q35-q36
31	18	G410	203764_at	DLG7 Chr:14q22.2
32	65	G410	219148_at	TOPK Chr:8p21.2
33	2	G410	201291_s_at	TOP2A Chr:17q21-q22
34	30	G410	204822_at	TTK Chr:6q13-q21
35	59	G410	218585_s_at	RAMP Chr:1q32.1-q32.2
36	3	G410	201292_at	TOP2A Chr:17q21-q22
37	21	G410	204033_at	TRIP13 Chr:5p15.33
38	33	G410	205034_at	CCNE2 Chr:8q22.1
39	40	G410	207828_s_at	CENPF Chr:1q32-q41
40	15	G410	203554_x_at	PTTG1 Chr:5q35.1
41	46	G410	210052_s_at	TPX2 Chr:20q11.2
42	4	G410	201890_at	RRM2 Chr:2p25-p24
43	39	G410	207165_at	HMMR Chr:5q33.2-qter
44	49	G410	213007_at	FLJ10719 Chr:15q25-q26
45	55	G410	218009_s_at	PRC1 Chr:15q26.1
46	56	G410	218039_at	NUSAP1 Chr:15q14
47	66	G410	219306_at	KNSL7 Chr:3p21.32
48	77	G410	222848_at	FKSG14 Chr:5p15.2-q12.3
49	88	G410	227350_at	--- ---
50	70	G410	220239_at	KLHL7 Chr:7p15.3
51	91	G410	228323_at	AF15Q14 Chr:15q14
52	100	G410	238756_at	LOC283431 Chr:12q23.3
53	50	G410	213226_at	PMSCL1 Chr:4q27
54	53	G410	214710_s_at	CCNB1 Chr:5q12
55	7	G410	202503_s_at	KIAA0101 Chr:15q22.1
56	20	G410	204026_s_at	ZWINT Chr:10q21-q22
57	27	G410	204444_at	KIF11 Chr:10q24.1
58	64	G410	218883_s_at	KLIP1 Chr:4q35.1
59	74	G410	222680_s_at	RAMP Chr:1q32.1-q32.2
60	79	G410	223381_at	CDCA1 Chr:1q23.2
61	86	G410	226980_at	XTP1 Chr:5q12.1
62	92	G410	228729_at	CCNB1 Chr:5q12
63	45	G410	209773_s_at	RRM2 Chr:2p25-p24
64	94	G410	229490_s_at	IQGAP3 Chr:1q23.1
65	68	G410	219787_s_at	ECT2 Chr:3q26.1-q26.2
66	69	G410	219918_s_at	ASPM Chr:1q31
67	71	G410	221521_s_at	Pfs2 Chr:16q24.1
68	78	G410	223229_at	HSPC150 Chr:1q32.1
69	54	G410	216237_s_at	MCM5 Chr:22q13.1
70	76	G410	222843_at	FIGNL1 Chr:7p12.2
71	60	G410	218662_s_at	HCAP-G Chr:4p16-p15
72	62	G410	218755_at	KIF20A Chr:5q31
73	89	G410	228033_at	E2F7 Chr:12q21.1
74	101	G410	242560_at	FANCD2 Chr:3p26
75	93	G410	229305_at	KLIP1 Chr:4q35.1
76	82	G410	225081_s_at	RAM2 Chr:7p15.3
77	58	G410	218542_at	C10orf3 Chr:10q23.33
78	29	G410	204641_at	NEK2 Chr:1q32.2-q41
79	51	G410	213906_at	MYBL1 Chr:8q22
80	11	G410	202870_s_at	CDC20 Chr:1p34.1
81	61	G410	218663_at	HCAP-G Chr:4p16-p15
82	87	G410	227249_at	NDE1 Chr:16p13.11
83	63		218875_s_at	FBXO5 Chr:6q25-q26
84	28		204510_at	CDC7 Chr:1p22
85	95		229551_x_at	ZNF367 Chr:9q22
86	75		222740_at	ATAD2 Chr:8q24.13
87	96		230165_at	SGOL2 Chr:2q33.2
88	67		219493_at	SHCBP1 Chr:16q11.2
89	90		228273_at	FLJ11029 Chr:17q23.2
90	81		224428_s_at	CDCA7 Chr:2q31
91	98		235425_at	SGOL2 Chr:2q33.2
92	99		236641_at	KIF14 Chr:1pter-q31.3
93	73		222077_s_at	RACGAP1 Chr:12q13.12
94	83		225655_at	UHRF1 Chr:19p13.3
95	52		214235_at	CYP3A5 Chr:7q21.1
96	36		205967_at	HIST1H4C Chr:6p21.3
97	72		222039_at	LOC146909 Chr:17q21.31
98	80		223748_at	SLC4A11 Chr:20p12
99	84		225834_at	MGC57827 ---
100	85		226319_s_at	THOC4 Chr:17q25.3
101	97		232315_at	LOC400713 Chr:19q13.41

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	29
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:32:25

G29_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=29)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC