G28_using_S4

Super-paramagnetic Clustering of 20 points in a 69 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=5)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    110 225639_atSCAP2 Chr:7p21-p15
    23 204362_atSCAP2 Chr:7p21-p15
    320 244521_at--- ---
    45 206858_s_atHOXC6 Chr:12q13.3
    519 239153_at--- Chr:12q13.13
    611 226582_at--- Chr:12q13.13
    71 1557051_s_at--- ---
    813 228642_at--- ---
    96 209905_atHOXA9 Chr:7p15-p14
    109 214651_s_atHOXA9 Chr:7p15-p14
    118 213844_atHOXA5 Chr:7p15-p14
    1216 235521_atHOXA3 Chr:7p15-p14
    137 213150_atHOXA10 Chr:7p15-p14
    1417 235753_at--- ---
    152 204121_atGADD45G Chr:9q22.1-q22.2
    164 205522_atHOXD4 Chr:2q31.1
    1714 229400_atHOXD10 Chr:2q31.1
    1818 238847_at--- ---
    1912 228564_atLOC375295 Chr:2q31.2
    2015 231906_atHOXD8 Chr:2q31.1

    Samples Names

    12104.cel
    281317.cel
    3412.cel
    43106.cel
    5111430.cel
    653547.cel
    758574.cel
    86129.cel
    930269.cel
    10101399.cel
    116070.cel
    12151497R.cel
    1331274.cel
    1418157.cel
    1542356bis.cel
    16221854R.cel
    176694bis.cel
    186490.cel
    19121437.cel
    2071308.cel
    2123190.cel
    2232283.cel
    231100R.cel
    2440345.cel
    251615.cel
    266180.cel
    2736300.cel
    286593.cel
    2928246.cel
    3029254.cel
    3126236.cel
    3234288.cel
    3346428.cel
    3417155R.cel
    3543360.cel
    3656566.cel
    37131453.cel
    38201621.cel
    3933284.cel
    4038328.cel
    4191360.cel
    4241349.cel
    43211622R.cel
    4424218.cel
    4547444.cel
    4627242.cel
    4744390.cel
    4850506.cel
    4951527.cel
    5055563.cel
    5119159.cel
    523530.cel
    5369ge205.cel
    5448458.cel
    5554558.cel
    5639344.cel
    5749461.cel
    586283.cel
    5914147.cel
    6025222.cel
    6151284.cel
    6245396.cel
    635757.cel
    646797.cel
    6537323.cel
    665965R.cel
    676384.cel
    6868ge197.cel
    6952528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)5
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 05:22:17