G28_using_S3

Super-paramagnetic Clustering of 20 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13		228642_at		--- ---
2	11		226582_at		--- Chr:12q13.13
3	16		235521_at		HOXA3 Chr:7p15-p14
4	15		231906_at		HOXD8 Chr:2q31.1
5	6		209905_at		HOXA9 Chr:7p15-p14
6	3		204362_at		SCAP2 Chr:7p21-p15
7	1		1557051_s_at		--- ---
8	2		204121_at		GADD45G Chr:9q22.1-q22.2
9	17		235753_at		--- ---
10	14		229400_at		HOXD10 Chr:2q31.1
11	8		213844_at		HOXA5 Chr:7p15-p14
12	20		244521_at		--- ---
13	4		205522_at		HOXD4 Chr:2q31.1
14	7		213150_at		HOXA10 Chr:7p15-p14
15	10		225639_at		SCAP2 Chr:7p21-p15
16	5		206858_s_at		HOXC6 Chr:12q13.3
17	9		214651_s_at		HOXA9 Chr:7p15-p14
18	12		228564_at		LOC375295 Chr:2q31.2
19	18		238847_at		--- ---
20	19		239153_at		--- Chr:12q13.13

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:20:53