G28_using_S2

Super-paramagnetic Clustering of 20 points in a 4 dimensional space.

Each point is a row.

Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

    • PCA of points

     

    K Mutual Nearest Neighbors (K=8)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes
    12 204121_atGADD45G Chr:9q22.1-q22.2
    27 213150_atHOXA10 Chr:7p15-p14
    34 205522_atHOXD4 Chr:2q31.1
    45 206858_s_atHOXC6 Chr:12q13.3
    59 214651_s_atHOXA9 Chr:7p15-p14
    614 229400_atHOXD10 Chr:2q31.1
    719 239153_at--- Chr:12q13.13
    86 209905_atHOXA9 Chr:7p15-p14
    916 235521_atHOXA3 Chr:7p15-p14
    1017 235753_at--- ---
    118 213844_atHOXA5 Chr:7p15-p14
    1211 226582_at--- Chr:12q13.13
    1315 231906_atHOXD8 Chr:2q31.1
    143 204362_atSCAP2 Chr:7p21-p15
    1510 225639_atSCAP2 Chr:7p21-p15
    1612 228564_atLOC375295 Chr:2q31.2
    1720 244521_at--- ---
    1813 228642_at--- ---
    191 1557051_s_at--- ---
    2018 238847_at--- ---

    Samples Names
    111357.cel
    221795R.cel
    331869RR.cel
    4455.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data

    Parameters for SPC

    K (nearest neighbors)8
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3
    Created by SPC_HTML_REPORT on 12-Aug-2004 05:19:24