G28_using_S1

Super-paramagnetic Clustering of 20 points in a 84 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=4)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    12 204121_atGADD45G Chr:9q22.1-q22.2
    215 231906_atHOXD8 Chr:2q31.1
    34 205522_atHOXD4 Chr:2q31.1
    412 228564_atLOC375295 Chr:2q31.2
    56 209905_atHOXA9 Chr:7p15-p14
    69 214651_s_atHOXA9 Chr:7p15-p14
    717 235753_at--- ---
    87 213150_atHOXA10 Chr:7p15-p14
    911 226582_at--- Chr:12q13.13
    105 206858_s_atHOXC6 Chr:12q13.3
    111 1557051_s_at--- ---
    1213 228642_at--- ---
    1316 235521_atHOXA3 Chr:7p15-p14
    1419 239153_at--- Chr:12q13.13
    158 213844_atHOXA5 Chr:7p15-p14
    1610 225639_atSCAP2 Chr:7p21-p15
    173 204362_atSCAP2 Chr:7p21-p15
    1820 244521_at--- ---
    1914 229400_atHOXD10 Chr:2q31.1
    2018 238847_at--- ---

    Samples Names

    125161.cel
    233211.cel
    3111357.cel
    4291795R.cel
    5311869RR.cel
    66655.cel
    718148.cel
    8211553.cel
    941076.cel
    10281780.cel
    112104.cel
    12101317.cel
    13512.cel
    143106.cel
    15141430.cel
    1665547.cel
    1771574.cel
    187129.cel
    1941269.cel
    20131399.cel
    217570.cel
    22191497R.cel
    2342274.cel
    2423157.cel
    2553356bis.cel
    26301854R.cel
    278194bis.cel
    287990.cel
    29151437.cel
    3091308.cel
    3132190.cel
    3243283.cel
    331100R.cel
    3451345.cel
    352015.cel
    367680.cel
    3747300.cel
    388093.cel
    3939246.cel
    4040254.cel
    4137236.cel
    4245288.cel
    4357428.cel
    4422155R.cel
    4554360.cel
    4669566.cel
    47161453.cel
    48261621.cel
    4944284.cel
    5049328.cel
    51121360.cel
    5252349.cel
    53271622R.cel
    5435218.cel
    5558444.cel
    5638242.cel
    5755390.cel
    5861506.cel
    5962527.cel
    6068563.cel
    6124159.cel
    624630.cel
    6384ge205.cel
    6459458.cel
    6567558.cel
    6650344.cel
    6760461.cel
    687783.cel
    6917147.cel
    7036222.cel
    7161284.cel
    7256396.cel
    737057.cel
    748297.cel
    7548323.cel
    767465R.cel
    777884.cel
    7883ge197.cel
    7963528bis.cel
    807363.cel
    8181297.cel
    8264534.cel
    8334212R.cel
    847257R.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)4
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 05:17:55