G27_using_S6

Super-paramagnetic Clustering of 79 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	22		219703_at	MNS1 Chr:15q21.2
2	52		231319_x_at	KIF9 Chr:3p21.31
3	13		205406_s_at	SPA17 Chr:11q24.2
4	6		1558077_s_at	MDH1B Chr:2q34
5	68		238327_at	ECGF1 Chr:22q13.33
6	29		220636_at	DNAI2 Chr:17q25
7	42		229012_at	C9orf24 Chr:9p13.2
8	26	G405 G406	220302_at	MAK Chr:6q22
9	27	G405 G406	220390_at	FLJ23598 Chr:11p11.2
10	38	G405 G406	227091_at	KIAA1505 Chr:7p12.3
11	63	G405 G406	236909_at	LOC129881 Chr:2q31.1
12	18	G405 G406	208140_s_at	DKFZP586M1120 Chr:17p11.2
13	15	G405 G406	206197_at	NME5 Chr:5q31
14	74	G405 G406	241310_at	--- ---
15	51	G405 G406	231084_at	C10orf79 Chr:10q25.1
16	24	G405 G406	220168_at	CASC1 Chr:12p12.1
17	47	G405 G406	230093_at	TSGA2 Chr:21q22.3
18	71	G405 G406	239916_at	LOC146845 Chr:17p13.1
19	58	G405 G406	235658_at	--- ---
20	25	G405 G406	220269_at	FLJ23049 Chr:3q26.2
21	9	G405 G406	202587_s_at	AK1 Chr:9q34.1
22	67	G405 G406	238116_at	DNCL2B Chr:16q23.3
23	19	G405 G406	210117_at	SPAG1 Chr:8q22.2
24	28	G405 G406	220591_s_at	FLJ22843 Chr:xp11.4
25	73	G405 G406	240857_at	DNAH9 Chr:17p12
26	30	G405 G406	222890_at	HSPC065 Chr:16q13
27	48	G405 G406	230763_at	LOC128153 Chr:1q41
28	3	G405 G406	1554298_a_at	FLJ33620 Chr:3q26.2
29	5	G405 G406	1557636_a_at	LOC136288 Chr:7p12.3
30	1	G405 G406	1553635_s_at	FLJ40873 Chr:1p31.3
31	41	G405 G406	228450_at	LOC144100 Chr:11p15.2-p15.1
32	50	G405 G406	231077_at	MGC20470 Chr:11p15.4
33	2	G405 G406	1554140_at	FLJ23129 Chr:1p31.3
34	49	G405 G406	231068_at	FLJ31196 Chr:17p11.2
35	40	G405 G406	228100_at	LOC128344 Chr:1p13.2
36	59	G405 G406	235946_at	FLJ32783 Chr:Xp11.23
37	56	G405 G406	232984_at	HYDIN Chr:16q22.2
38	54	G405 G406	231549_at	MGC35194 Chr:1p36.21
39	65	G405 G406	237168_at	KIAA0266 Chr:13q12.2-q13.3
40	20	G405 G406	218876_at	CGI-38 Chr:16q22.1
41	16	G405 G406	207624_s_at	RPGR Chr:xp11.4
42	32	G405 G406	223924_at	DKFZP434H0115 Chr:17q21.31
43	44	G405 G406	229170_s_at	TTC18 Chr:10q22.3
44	43	G405 G406	229169_at	TTC18 Chr:10q22.3
45	33	G406	224463_s_at	MGC13040 Chr:11q22.2
46	72	G406	240065_at	FLJ25333 Chr:5q15
47	62	G406	236717_at	LOC165186 Chr:2p23.3
48	76	G406	243087_at	NYD-SP29 Chr:1p22.3
49	66	G406	237281_at	AKAP28 Chr:xq25
50	78	G406	243802_at	FLJ40427 Chr:3p21.2
51	46	G406	229816_at	FLJ23129 Chr:1p31.3
52	4	G406	1554528_at	AAT1 Chr:3q12-q13.3
53	60	G406	236222_at	AAT1 Chr:3q12-q13.3
54	77	G406	243198_at	LOC161577 Chr:15q21.2
55	57	G406	233516_s_at	PF6 Chr:1p12
56	61	G406	236325_at	--- ---
57	70	G406	239776_at	--- Chr:5q22.1
58	69		238584_at	FLJ22527 Chr:2q37.3
59	10		203397_s_at	GALNT3 Chr:2q24-q31
60	45		229331_at	LOC132671 Chr:4q12
61	39		227105_at	FLJ22490 Chr:8q13.1
62	53		231380_at	VEST1 Chr:8q13
63	7		1558487_a_at	HNLF Chr:7p13
64	8		1562921_at	--- Chr:22q13.2
65	11		204187_at	GMPR Chr:6p23
66	37		227081_at	DNALI1 Chr:1p35.1
67	79		64900_at	CHST5 Chr:16q22.3
68	31		223642_at	ZIC2 Chr:13q32
69	12		205186_at	DNALI1 Chr:1p35.1
70	36		226872_at	RFX2 Chr:19p13.3-p13.2
71	21		219229_at	SLCO3A1 Chr:15q26
72	34		225656_at	EFHC1 Chr:6p12.3
73	23		219833_s_at	EFHC1 Chr:6p12.3
74	17		207797_s_at	DKFZp761O0113 Chr:4q35.1
75	64		236915_at	--- ---
76	55		231729_s_at	CAPS Chr:19p13.3
77	75		241470_x_at	--- ---
78	14		205714_s_at	ZMYND10 Chr:3p21.3
79	35		226558_at	--- ---

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:16:29

G27_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC