G27_using_S5

Super-paramagnetic Clustering of 79 points in a 73 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=9)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    134 225656_atEFHC1 Chr:6p12.3
    223 219833_s_atEFHC1 Chr:6p12.3
    322 219703_atMNS1 Chr:15q21.2
    452 231319_x_atKIF9 Chr:3p21.31
    54 1554528_atAAT1 Chr:3q12-q13.3
    660 236222_atAAT1 Chr:3q12-q13.3
    727 220390_atFLJ23598 Chr:11p11.2
    838 227091_atKIAA1505 Chr:7p12.3
    918 208140_s_atDKFZP586M1120 Chr:17p11.2
    1063 236909_atLOC129881 Chr:2q31.1
    1174 241310_at--- ---
    1251 231084_atC10orf79 Chr:10q25.1
    1347 230093_atTSGA2 Chr:21q22.3
    1471 239916_atLOC146845 Chr:17p13.1
    1558 235658_at--- ---
    1625 220269_atFLJ23049 Chr:3q26.2
    179 202587_s_atAK1 Chr:9q34.1
    1815 206197_atNME5 Chr:5q31
    1967 238116_atDNCL2B Chr:16q23.3
    2026 220302_atMAK Chr:6q22
    2124 220168_atCASC1 Chr:12p12.1
    2265 237168_atKIAA0266 Chr:13q12.2-q13.3
    2346 229816_atFLJ23129 Chr:1p31.3
    2419 210117_atSPAG1 Chr:8q22.2
    2528 220591_s_atFLJ22843 Chr:xp11.4
    2673 240857_atDNAH9 Chr:17p12
    273 1554298_a_atFLJ33620 Chr:3q26.2
    285 1557636_a_atLOC136288 Chr:7p12.3
    291 1553635_s_atFLJ40873 Chr:1p31.3
    3037 227081_atDNALI1 Chr:1p35.1
    3112 205186_atDNALI1 Chr:1p35.1
    3248 230763_atLOC128153 Chr:1q41
    332 1554140_atFLJ23129 Chr:1p31.3
    3450 231077_atMGC20470 Chr:11p15.4
    3578 243802_atFLJ40427 Chr:3p21.2
    3613 205406_s_atSPA17 Chr:11q24.2
    376 1558077_s_atMDH1B Chr:2q34
    3833 224463_s_atMGC13040 Chr:11q22.2
    3972 240065_atFLJ25333 Chr:5q15
    4043 229169_atTTC18 Chr:10q22.3
    4144 229170_s_atTTC18 Chr:10q22.3
    4262 236717_atLOC165186 Chr:2p23.3
    4366 237281_atAKAP28 Chr:xq25
    4476 243087_atNYD-SP29 Chr:1p22.3
    4556 232984_atHYDIN Chr:16q22.2
    4654 231549_atMGC35194 Chr:1p36.21
    4740 228100_atLOC128344 Chr:1p13.2
    4859 235946_atFLJ32783 Chr:Xp11.23
    4970 239776_at--- Chr:5q22.1
    5049 231068_atFLJ31196 Chr:17p11.2
    5120 218876_atCGI-38 Chr:16q22.1
    5230 222890_atHSPC065 Chr:16q13
    5316 207624_s_atRPGR Chr:xp11.4
    5432 223924_atDKFZP434H0115 Chr:17q21.31
    5541 228450_atLOC144100 Chr:11p15.2-p15.1
    5639 227105_atFLJ22490 Chr:8q13.1
    5768 238327_atECGF1 Chr:22q13.33
    5829 220636_atDNAI2 Chr:17q25
    5961 236325_at--- ---
    6077 243198_atLOC161577 Chr:15q21.2
    6145 229331_atLOC132671 Chr:4q12
    628 1562921_at--- Chr:22q13.2
    6342 229012_atC9orf24 Chr:9p13.2
    6457 233516_s_atPF6 Chr:1p12
    6579 64900_atCHST5 Chr:16q22.3
    6669 238584_atFLJ22527 Chr:2q37.3
    6753 231380_atVEST1 Chr:8q13
    6810 203397_s_atGALNT3 Chr:2q24-q31
    6911 204187_atGMPR Chr:6p23
    707 1558487_a_atHNLF Chr:7p13
    7136 226872_atRFX2 Chr:19p13.3-p13.2
    7231 223642_atZIC2 Chr:13q32
    7321 219229_atSLCO3A1 Chr:15q26
    7417 207797_s_atDKFZp761O0113 Chr:4q35.1
    7564 236915_at--- ---
    7655 231729_s_atCAPS Chr:19p13.3
    7775 241470_x_at--- ---
    7814 205714_s_atZMYND10 Chr:3p21.3
    7935 226558_at--- ---

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156470.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217094bis.cel
    226890.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306580.cel
    3140300.cel
    326993.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5773ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626683.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687197.cel
    6941323.cel
    706365R.cel
    716784.cel
    7272ge197.cel
    7356528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)9
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 05:12:54