G27_using_S4

Super-paramagnetic Clustering of 79 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	34		225656_at	EFHC1 Chr:6p12.3
2	23		219833_s_at	EFHC1 Chr:6p12.3
3	19	G403 G404	210117_at	SPAG1 Chr:8q22.2
4	37	G403 G404	227081_at	DNALI1 Chr:1p35.1
5	12	G403 G404	205186_at	DNALI1 Chr:1p35.1
6	46	G403 G404	229816_at	FLJ23129 Chr:1p31.3
7	73	G403 G404	240857_at	DNAH9 Chr:17p12
8	15	G403 G404	206197_at	NME5 Chr:5q31
9	3	G403 G404	1554298_a_at	FLJ33620 Chr:3q26.2
10	28	G403 G404	220591_s_at	FLJ22843 Chr:xp11.4
11	32	G403 G404	223924_at	DKFZP434H0115 Chr:17q21.31
12	26	G403 G404	220302_at	MAK Chr:6q22
13	6	G403 G404	1558077_s_at	MDH1B Chr:2q34
14	27	G403 G404	220390_at	FLJ23598 Chr:11p11.2
15	58	G403 G404	235658_at	--- ---
16	1	G403 G404	1553635_s_at	FLJ40873 Chr:1p31.3
17	5	G403 G404	1557636_a_at	LOC136288 Chr:7p12.3
18	48	G403 G404	230763_at	LOC128153 Chr:1q41
19	47	G403 G404	230093_at	TSGA2 Chr:21q22.3
20	74	G403 G404	241310_at	--- ---
21	67	G403 G404	238116_at	DNCL2B Chr:16q23.3
22	50	G403 G404	231077_at	MGC20470 Chr:11p15.4
23	18	G403 G404	208140_s_at	DKFZP586M1120 Chr:17p11.2
24	24	G403 G404	220168_at	CASC1 Chr:12p12.1
25	9	G403 G404	202587_s_at	AK1 Chr:9q34.1
26	51	G403 G404	231084_at	C10orf79 Chr:10q25.1
27	71	G403 G404	239916_at	LOC146845 Chr:17p13.1
28	25	G403 G404	220269_at	FLJ23049 Chr:3q26.2
29	2	G403 G404	1554140_at	FLJ23129 Chr:1p31.3
30	13	G403 G404	205406_s_at	SPA17 Chr:11q24.2
31	4	G404	1554528_at	AAT1 Chr:3q12-q13.3
32	60	G404	236222_at	AAT1 Chr:3q12-q13.3
33	36	G404	226872_at	RFX2 Chr:19p13.3-p13.2
34	56	G404	232984_at	HYDIN Chr:16q22.2
35	54	G404	231549_at	MGC35194 Chr:1p36.21
36	40	G404	228100_at	LOC128344 Chr:1p13.2
37	59	G404	235946_at	FLJ32783 Chr:Xp11.23
38	62	G404	236717_at	LOC165186 Chr:2p23.3
39	66	G404	237281_at	AKAP28 Chr:xq25
40	76	G404	243087_at	NYD-SP29 Chr:1p22.3
41	38	G404	227091_at	KIAA1505 Chr:7p12.3
42	63	G404	236909_at	LOC129881 Chr:2q31.1
43	70	G404	239776_at	--- Chr:5q22.1
44	61	G404	236325_at	--- ---
45	65	G404	237168_at	KIAA0266 Chr:13q12.2-q13.3
46	33	G404	224463_s_at	MGC13040 Chr:11q22.2
47	72	G404	240065_at	FLJ25333 Chr:5q15
48	78	G404	243802_at	FLJ40427 Chr:3p21.2
49	49	G404	231068_at	FLJ31196 Chr:17p11.2
50	39	G404	227105_at	FLJ22490 Chr:8q13.1
51	20	G404	218876_at	CGI-38 Chr:16q22.1
52	41	G404	228450_at	LOC144100 Chr:11p15.2-p15.1
53	64	G404	236915_at	--- ---
54	68		238327_at	ECGF1 Chr:22q13.33
55	29		220636_at	DNAI2 Chr:17q25
56	42		229012_at	C9orf24 Chr:9p13.2
57	57		233516_s_at	PF6 Chr:1p12
58	44		229170_s_at	TTC18 Chr:10q22.3
59	43		229169_at	TTC18 Chr:10q22.3
60	77		243198_at	LOC161577 Chr:15q21.2
61	53		231380_at	VEST1 Chr:8q13
62	10		203397_s_at	GALNT3 Chr:2q24-q31
63	69		238584_at	FLJ22527 Chr:2q37.3
64	7		1558487_a_at	HNLF Chr:7p13
65	8		1562921_at	--- Chr:22q13.2
66	11		204187_at	GMPR Chr:6p23
67	45		229331_at	LOC132671 Chr:4q12
68	30		222890_at	HSPC065 Chr:16q13
69	79		64900_at	CHST5 Chr:16q22.3
70	31		223642_at	ZIC2 Chr:13q32
71	17		207797_s_at	DKFZp761O0113 Chr:4q35.1
72	21		219229_at	SLCO3A1 Chr:15q26
73	16		207624_s_at	RPGR Chr:xp11.4
74	22		219703_at	MNS1 Chr:15q21.2
75	52		231319_x_at	KIF9 Chr:3p21.31
76	75		241470_x_at	--- ---
77	55		231729_s_at	CAPS Chr:19p13.3
78	14		205714_s_at	ZMYND10 Chr:3p21.3
79	35		226558_at	--- ---

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:10:04

G27_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC