G27_using_S3

Super-paramagnetic Clustering of 79 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	67		238116_at	DNCL2B Chr:16q23.3
2	42		229012_at	C9orf24 Chr:9p13.2
3	10		203397_s_at	GALNT3 Chr:2q24-q31
4	5		1557636_a_at	LOC136288 Chr:7p12.3
5	48	G401	230763_at	LOC128153 Chr:1q41
6	45	G401	229331_at	LOC132671 Chr:4q12
7	26	G401	220302_at	MAK Chr:6q22
8	66	G401	237281_at	AKAP28 Chr:xq25
9	21	G401	219229_at	SLCO3A1 Chr:15q26
10	34	G401	225656_at	EFHC1 Chr:6p12.3
11	76	G401	243087_at	NYD-SP29 Chr:1p22.3
12	3	G401	1554298_a_at	FLJ33620 Chr:3q26.2
13	41	G401	228450_at	LOC144100 Chr:11p15.2-p15.1
14	46	G401	229816_at	FLJ23129 Chr:1p31.3
15	33	G401	224463_s_at	MGC13040 Chr:11q22.2
16	75	G401	241470_x_at	--- ---
17	64	G401	236915_at	--- ---
18	78	G400 G401	243802_at	FLJ40427 Chr:3p21.2
19	7	G400 G401	1558487_a_at	HNLF Chr:7p13
20	52	G400 G401	231319_x_at	KIF9 Chr:3p21.31
21	22	G400 G401	219703_at	MNS1 Chr:15q21.2
22	2	G400 G401	1554140_at	FLJ23129 Chr:1p31.3
23	23	G400 G401	219833_s_at	EFHC1 Chr:6p12.3
24	8	G400 G401	1562921_at	--- Chr:22q13.2
25	12	G400 G401	205186_at	DNALI1 Chr:1p35.1
26	51	G400 G401	231084_at	C10orf79 Chr:10q25.1
27	11	G400 G401	204187_at	GMPR Chr:6p23
28	18	G400 G401	208140_s_at	DKFZP586M1120 Chr:17p11.2
29	9	G400 G401	202587_s_at	AK1 Chr:9q34.1
30	20	G400 G401	218876_at	CGI-38 Chr:16q22.1
31	56	G400 G401	232984_at	HYDIN Chr:16q22.2
32	62	G400 G401	236717_at	LOC165186 Chr:2p23.3
33	77	G400 G401	243198_at	LOC161577 Chr:15q21.2
34	47	G401	230093_at	TSGA2 Chr:21q22.3
35	55		231729_s_at	CAPS Chr:19p13.3
36	50		231077_at	MGC20470 Chr:11p15.4
37	17		207797_s_at	DKFZp761O0113 Chr:4q35.1
38	19		210117_at	SPAG1 Chr:8q22.2
39	25		220269_at	FLJ23049 Chr:3q26.2
40	54		231549_at	MGC35194 Chr:1p36.21
41	32		223924_at	DKFZP434H0115 Chr:17q21.31
42	72		240065_at	FLJ25333 Chr:5q15
43	4		1554528_at	AAT1 Chr:3q12-q13.3
44	37		227081_at	DNALI1 Chr:1p35.1
45	43		229169_at	TTC18 Chr:10q22.3
46	36		226872_at	RFX2 Chr:19p13.3-p13.2
47	63		236909_at	LOC129881 Chr:2q31.1
48	27		220390_at	FLJ23598 Chr:11p11.2
49	65		237168_at	KIAA0266 Chr:13q12.2-q13.3
50	44		229170_s_at	TTC18 Chr:10q22.3
51	60		236222_at	AAT1 Chr:3q12-q13.3
52	31		223642_at	ZIC2 Chr:13q32
53	59		235946_at	FLJ32783 Chr:Xp11.23
54	39		227105_at	FLJ22490 Chr:8q13.1
55	57		233516_s_at	PF6 Chr:1p12
56	68		238327_at	ECGF1 Chr:22q13.33
57	79	G402	64900_at	CHST5 Chr:16q22.3
58	73	G402	240857_at	DNAH9 Chr:17p12
59	15	G402	206197_at	NME5 Chr:5q31
60	58	G402	235658_at	--- ---
61	14	G402	205714_s_at	ZMYND10 Chr:3p21.3
62	16	G402	207624_s_at	RPGR Chr:xp11.4
63	24	G402	220168_at	CASC1 Chr:12p12.1
64	30	G402	222890_at	HSPC065 Chr:16q13
65	28	G402	220591_s_at	FLJ22843 Chr:xp11.4
66	71	G402	239916_at	LOC146845 Chr:17p13.1
67	69	G402	238584_at	FLJ22527 Chr:2q37.3
68	35	G402	226558_at	--- ---
69	1	G402	1553635_s_at	FLJ40873 Chr:1p31.3
70	38	G402	227091_at	KIAA1505 Chr:7p12.3
71	74	G402	241310_at	--- ---
72	29	G402	220636_at	DNAI2 Chr:17q25
73	53	G402	231380_at	VEST1 Chr:8q13
74	70	G402	239776_at	--- Chr:5q22.1
75	40	G402	228100_at	LOC128344 Chr:1p13.2
76	13	G402	205406_s_at	SPA17 Chr:11q24.2
77	6	G402	1558077_s_at	MDH1B Chr:2q34
78	49	G402	231068_at	FLJ31196 Chr:17p11.2
79	61	G402	236325_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:07:01

G27_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC