G27_using_S1

Super-paramagnetic Clustering of 79 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	34		225656_at	EFHC1 Chr:6p12.3
2	23		219833_s_at	EFHC1 Chr:6p12.3
3	64		236915_at	--- ---
4	37		227081_at	DNALI1 Chr:1p35.1
5	11		204187_at	GMPR Chr:6p23
6	12		205186_at	DNALI1 Chr:1p35.1
7	73	G397 G398	240857_at	DNAH9 Chr:17p12
8	19	G397 G398	210117_at	SPAG1 Chr:8q22.2
9	28	G397 G398	220591_s_at	FLJ22843 Chr:xp11.4
10	41	G397 G398	228450_at	LOC144100 Chr:11p15.2-p15.1
11	1	G397 G398	1553635_s_at	FLJ40873 Chr:1p31.3
12	50	G397 G398	231077_at	MGC20470 Chr:11p15.4
13	40	G397 G398	228100_at	LOC128344 Chr:1p13.2
14	5	G397 G398	1557636_a_at	LOC136288 Chr:7p12.3
15	49	G397 G398	231068_at	FLJ31196 Chr:17p11.2
16	56	G397 G398	232984_at	HYDIN Chr:16q22.2
17	47	G397 G398	230093_at	TSGA2 Chr:21q22.3
18	3	G397 G398	1554298_a_at	FLJ33620 Chr:3q26.2
19	74	G397 G398	241310_at	--- ---
20	51	G397 G398	231084_at	C10orf79 Chr:10q25.1
21	71	G397 G398	239916_at	LOC146845 Chr:17p13.1
22	67	G397 G398	238116_at	DNCL2B Chr:16q23.3
23	24	G397 G398	220168_at	CASC1 Chr:12p12.1
24	59	G397 G398	235946_at	FLJ32783 Chr:Xp11.23
25	58	G397 G398	235658_at	--- ---
26	54	G397 G398	231549_at	MGC35194 Chr:1p36.21
27	25	G397 G398	220269_at	FLJ23049 Chr:3q26.2
28	65	G397 G398	237168_at	KIAA0266 Chr:13q12.2-q13.3
29	9	G397 G398	202587_s_at	AK1 Chr:9q34.1
30	48	G397 G398	230763_at	LOC128153 Chr:1q41
31	2	G397 G398	1554140_at	FLJ23129 Chr:1p31.3
32	30	G397 G398	222890_at	HSPC065 Chr:16q13
33	13	G398	205406_s_at	SPA17 Chr:11q24.2
34	6	G398	1558077_s_at	MDH1B Chr:2q34
35	15	G398	206197_at	NME5 Chr:5q31
36	20	G398	218876_at	CGI-38 Chr:16q22.1
37	38	G398	227091_at	KIAA1505 Chr:7p12.3
38	63	G398	236909_at	LOC129881 Chr:2q31.1
39	18	G398	208140_s_at	DKFZP586M1120 Chr:17p11.2
40	46	G398	229816_at	FLJ23129 Chr:1p31.3
41	39	G398	227105_at	FLJ22490 Chr:8q13.1
42	32	G398	223924_at	DKFZP434H0115 Chr:17q21.31
43	77	G398	243198_at	LOC161577 Chr:15q21.2
44	4	G398	1554528_at	AAT1 Chr:3q12-q13.3
45	16	G398	207624_s_at	RPGR Chr:xp11.4
46	60	G398	236222_at	AAT1 Chr:3q12-q13.3
47	70	G398	239776_at	--- Chr:5q22.1
48	61	G398	236325_at	--- ---
49	33	G398	224463_s_at	MGC13040 Chr:11q22.2
50	76	G398	243087_at	NYD-SP29 Chr:1p22.3
51	62	G398	236717_at	LOC165186 Chr:2p23.3
52	72	G398	240065_at	FLJ25333 Chr:5q15
53	66	G398	237281_at	AKAP28 Chr:xq25
54	78	G398	243802_at	FLJ40427 Chr:3p21.2
55	42	G398	229012_at	C9orf24 Chr:9p13.2
56	55	G398	231729_s_at	CAPS Chr:19p13.3
57	10	G398	203397_s_at	GALNT3 Chr:2q24-q31
58	53	G398	231380_at	VEST1 Chr:8q13
59	68	G398	238327_at	ECGF1 Chr:22q13.33
60	29	G398	220636_at	DNAI2 Chr:17q25
61	57	G398	233516_s_at	PF6 Chr:1p12
62	8	G398	1562921_at	--- Chr:22q13.2
63	14	G398	205714_s_at	ZMYND10 Chr:3p21.3
64	75	G398	241470_x_at	--- ---
65	26	G398	220302_at	MAK Chr:6q22
66	27	G398	220390_at	FLJ23598 Chr:11p11.2
67	69	G398	238584_at	FLJ22527 Chr:2q37.3
68	45	G398	229331_at	LOC132671 Chr:4q12
69	36		226872_at	RFX2 Chr:19p13.3-p13.2
70	79		64900_at	CHST5 Chr:16q22.3
71	31		223642_at	ZIC2 Chr:13q32
72	7		1558487_a_at	HNLF Chr:7p13
73	17		207797_s_at	DKFZp761O0113 Chr:4q35.1
74	21		219229_at	SLCO3A1 Chr:15q26
75	22		219703_at	MNS1 Chr:15q21.2
76	52		231319_x_at	KIF9 Chr:3p21.31
77	43		229169_at	TTC18 Chr:10q22.3
78	44		229170_s_at	TTC18 Chr:10q22.3
79	35		226558_at	--- ---

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:00:03

G27_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC