G26_using_S4

Super-paramagnetic Clustering of 91 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	17		204023_at	RFC4 Chr:3q27
2	4		202107_s_at	MCM2 Chr:3q21
3	33		205394_at	CHEK1 Chr:11q24-q24
4	34		205967_at	HIST1H4C Chr:6p21.3
5	19	G390	204033_at	TRIP13 Chr:5p15.33
6	23	G390	204240_s_at	SMC2L1 Chr:9q31.2
7	9	G389 G390	202870_s_at	CDC20 Chr:1p34.1
8	12	G389 G390	203362_s_at	MAD2L1 Chr:4q27
9	58	G389 G390	218875_s_at	FBXO5 Chr:6q25-q26
10	62	G389 G390	219787_s_at	ECT2 Chr:3q26.1-q26.2
11	42	G389 G390	209642_at	BUB1 Chr:2q14
12	29	G389 G390	204825_at	MELK Chr:9p13.1
13	60	G389 G390	219148_at	TOPK Chr:8p21.2
14	10	G389 G390	203213_at	CDC2 Chr:10q21.1
15	49	G389 G390	214710_s_at	CCNB1 Chr:5q12
16	22	G389 G390	204170_s_at	CKS2 Chr:9q22
17	84	G389 G390	229490_s_at	IQGAP3 Chr:1q23.1
18	82	G389 G390	228729_at	CCNB1 Chr:5q12
19	13	G389 G390	203554_x_at	PTTG1 Chr:5q35.1
20	25	G389 G390	204444_at	KIF11 Chr:10q24.1
21	54	G389 G390	218585_s_at	RAMP Chr:1q32.1-q32.2
22	11	G389 G390	203358_s_at	EZH2 Chr:7q35-q36
23	7	G389 G390	202589_at	TYMS Chr:18p11.32
24	61	G389 G390	219306_at	KNSL7 Chr:3p21.32
25	1	G389 G390	201291_s_at	TOP2A Chr:17q21-q22
26	2	G389 G390	201292_at	TOP2A Chr:17q21-q22
27	21	G389 G390	204162_at	KNTC2 Chr:18p11.31
28	72	G389 G390	223381_at	CDCA1 Chr:1q23.2
29	20	G389 G390	204146_at	PIR51 Chr:12p13.2-p13.1
30	47	G389 G390	213226_at	PMSCL1 Chr:4q27
31	15	G389 G390	203755_at	BUB1B Chr:15q15
32	38	G389 G390	207828_s_at	CENPF Chr:1q32-q41
33	53	G389 G390	218355_at	KIF4A Chr:xq13.1
34	18	G389 G390	204026_s_at	ZWINT Chr:10q21-q22
35	24	G389 G390	204244_s_at	ASK Chr:7q21.3
36	27	G389 G390	204641_at	NEK2 Chr:1q32.2-q41
37	3	G389 G390	201890_at	RRM2 Chr:2p25-p24
38	43	G389 G390	209773_s_at	RRM2 Chr:2p25-p24
39	39	G389 G390	208079_s_at	STK6 Chr:20q13.2-q13.3
40	8	G389 G390	202705_at	CCNB2 Chr:15q21.3
41	51	G389 G390	218009_s_at	PRC1 Chr:15q26.1
42	52	G389 G390	218039_at	NUSAP1 Chr:15q14
43	63	G389 G390	219918_s_at	ASPM Chr:1q31
44	80	G389 G390	228273_at	FLJ11029 Chr:17q23.2
45	76	G389 G390	226980_at	XTP1 Chr:5q12.1
46	89	G389 G390	236641_at	KIF14 Chr:1pter-q31.3
47	6	G389 G390	202580_x_at	FOXM1 Chr:12p13
48	41	G389 G390	209172_s_at	CENPF Chr:1q32-q41
49	59	G389 G390	218883_s_at	KLIP1 Chr:4q35.1
50	86	G389 G390	230165_at	SGOL2 Chr:2q33.2
51	30	G389 G390	204962_s_at	CENPA Chr:2p24-p21
52	32	G389 G390	205046_at	CENPE Chr:4q24-q25
53	28	G389 G390	204822_at	TTK Chr:6q13-q21
54	44	G389 G390	210052_s_at	TPX2 Chr:20q11.2
55	45	G389 G390	210559_s_at	CDC2 Chr:10q21.1
56	57	G389 G390	218755_at	KIF20A Chr:5q31
57	35	G389 G390	206102_at	KIAA0186 Chr:20p11.21
58	37	G389 G390	207165_at	HMMR Chr:5q33.2-qter
59	67	G389 G390	222680_s_at	RAMP Chr:1q32.1-q32.2
60	91	G389 G390	242560_at	FANCD2 Chr:3p26
61	71	G389 G390	223229_at	HSPC150 Chr:1q32.1
62	16	G390	203764_at	DLG7 Chr:14q22.2
63	55	G390	218662_s_at	HCAP-G Chr:4p16-p15
64	56	G390	218663_at	HCAP-G Chr:4p16-p15
65	74	G390	225834_at	MGC57827 ---
66	90	G390	238756_at	LOC283431 Chr:12q23.3
67	40	G390	208808_s_at	HMGB2 Chr:4q31
68	77	G390	227249_at	NDE1 Chr:16p13.11
69	14	G390	203560_at	GGH Chr:8q12.2
70	75	G390	226319_s_at	THOC4 Chr:17q25.3
71	81	G390	228323_at	AF15Q14 Chr:15q14
72	83	G390	229305_at	KLIP1 Chr:4q35.1
73	50	G390	216237_s_at	MCM5 Chr:22q13.1
74	65	G390	222039_at	LOC146909 Chr:17q21.31
75	66	G390	222077_s_at	RACGAP1 Chr:12q13.12
76	88	G390	235425_at	SGOL2 Chr:2q33.2
77	68	G390	222740_at	ATAD2 Chr:8q24.13
78	31	G390	205034_at	CCNE2 Chr:8q22.1
79	85	G390	229551_x_at	ZNF367 Chr:9q22
80	36	G390	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
81	5		202503_s_at	KIAA0101 Chr:15q22.1
82	46		213007_at	FLJ10719 Chr:15q25-q26
83	70		222848_at	FKSG14 Chr:5p15.2-q12.3
84	79		228033_at	E2F7 Chr:12q21.1
85	69		222843_at	FIGNL1 Chr:7p12.2
86	73		224428_s_at	CDCA7 Chr:2q31
87	64		220239_at	KLHL7 Chr:7p15.3
88	26		204510_at	CDC7 Chr:1p22
89	48		213906_at	MYBL1 Chr:8q22
90	78		227350_at	--- ---
91	87		232315_at	LOC400713 Chr:19q13.41

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:49:04

G26_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC