G26_using_S3

Super-paramagnetic Clustering of 91 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	76		226980_at	XTP1 Chr:5q12.1
2	88		235425_at	SGOL2 Chr:2q33.2
3	77		227249_at	NDE1 Chr:16p13.11
4	73		224428_s_at	CDCA7 Chr:2q31
5	7		202589_at	TYMS Chr:18p11.32
6	46		213007_at	FLJ10719 Chr:15q25-q26
7	91		242560_at	FANCD2 Chr:3p26
8	25		204444_at	KIF11 Chr:10q24.1
9	40		208808_s_at	HMGB2 Chr:4q31
10	50		216237_s_at	MCM5 Chr:22q13.1
11	48		213906_at	MYBL1 Chr:8q22
12	54		218585_s_at	RAMP Chr:1q32.1-q32.2
13	4		202107_s_at	MCM2 Chr:3q21
14	17		204023_at	RFC4 Chr:3q27
15	22		204170_s_at	CKS2 Chr:9q22
16	64		220239_at	KLHL7 Chr:7p15.3
17	75		226319_s_at	THOC4 Chr:17q25.3
18	83		229305_at	KLIP1 Chr:4q35.1
19	56		218663_at	HCAP-G Chr:4p16-p15
20	87		232315_at	LOC400713 Chr:19q13.41
21	9		202870_s_at	CDC20 Chr:1p34.1
22	24		204244_s_at	ASK Chr:7q21.3
23	38		207828_s_at	CENPF Chr:1q32-q41
24	49	G388	214710_s_at	CCNB1 Chr:5q12
25	51	G388	218009_s_at	PRC1 Chr:15q26.1
26	11	G388	203358_s_at	EZH2 Chr:7q35-q36
27	44	G388	210052_s_at	TPX2 Chr:20q11.2
28	86	G388	230165_at	SGOL2 Chr:2q33.2
29	63	G388	219918_s_at	ASPM Chr:1q31
30	13	G388	203554_x_at	PTTG1 Chr:5q35.1
31	15	G388	203755_at	BUB1B Chr:15q15
32	16	G388	203764_at	DLG7 Chr:14q22.2
33	81	G386 G388	228323_at	AF15Q14 Chr:15q14
34	34	G386 G388	205967_at	HIST1H4C Chr:6p21.3
35	3	G386 G388	201890_at	RRM2 Chr:2p25-p24
36	5	G386 G388	202503_s_at	KIAA0101 Chr:15q22.1
37	21	G386 G388	204162_at	KNTC2 Chr:18p11.31
38	10	G386 G388	203213_at	CDC2 Chr:10q21.1
39	47	G386 G388	213226_at	PMSCL1 Chr:4q27
40	59	G386 G388	218883_s_at	KLIP1 Chr:4q35.1
41	8	G386 G388	202705_at	CCNB2 Chr:15q21.3
42	74	G386 G388	225834_at	MGC57827 ---
43	1	G386 G388	201291_s_at	TOP2A Chr:17q21-q22
44	2	G386 G388	201292_at	TOP2A Chr:17q21-q22
45	53	G386 G388	218355_at	KIF4A Chr:xq13.1
46	36	G386 G388	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
47	70	G386 G388	222848_at	FKSG14 Chr:5p15.2-q12.3
48	30	G386 G388	204962_s_at	CENPA Chr:2p24-p21
49	89	G386 G388	236641_at	KIF14 Chr:1pter-q31.3
50	14	G387 G388	203560_at	GGH Chr:8q12.2
51	72	G387 G388	223381_at	CDCA1 Chr:1q23.2
52	41	G387 G388	209172_s_at	CENPF Chr:1q32-q41
53	18	G387 G388	204026_s_at	ZWINT Chr:10q21-q22
54	29	G387 G388	204825_at	MELK Chr:9p13.1
55	35	G387 G388	206102_at	KIAA0186 Chr:20p11.21
56	27	G387 G388	204641_at	NEK2 Chr:1q32.2-q41
57	28	G387 G388	204822_at	TTK Chr:6q13-q21
58	58	G387 G388	218875_s_at	FBXO5 Chr:6q25-q26
59	60	G387 G388	219148_at	TOPK Chr:8p21.2
60	79	G387 G388	228033_at	E2F7 Chr:12q21.1
61	61	G387 G388	219306_at	KNSL7 Chr:3p21.32
62	32	G387 G388	205046_at	CENPE Chr:4q24-q25
63	12	G387 G388	203362_s_at	MAD2L1 Chr:4q27
64	62	G387 G388	219787_s_at	ECT2 Chr:3q26.1-q26.2
65	67	G387 G388	222680_s_at	RAMP Chr:1q32.1-q32.2
66	82	G387 G388	228729_at	CCNB1 Chr:5q12
67	68	G387 G388	222740_at	ATAD2 Chr:8q24.13
68	19	G387 G388	204033_at	TRIP13 Chr:5p15.33
69	71	G387 G388	223229_at	HSPC150 Chr:1q32.1
70	80	G387 G388	228273_at	FLJ11029 Chr:17q23.2
71	45	G387 G388	210559_s_at	CDC2 Chr:10q21.1
72	65	G387 G388	222039_at	LOC146909 Chr:17q21.31
73	43	G387 G388	209773_s_at	RRM2 Chr:2p25-p24
74	23	G388	204240_s_at	SMC2L1 Chr:9q31.2
75	37	G388	207165_at	HMMR Chr:5q33.2-qter
76	20	G388	204146_at	PIR51 Chr:12p13.2-p13.1
77	52	G388	218039_at	NUSAP1 Chr:15q14
78	69	G388	222843_at	FIGNL1 Chr:7p12.2
79	85	G388	229551_x_at	ZNF367 Chr:9q22
80	66	G388	222077_s_at	RACGAP1 Chr:12q13.12
81	6	G388	202580_x_at	FOXM1 Chr:12p13
82	90	G388	238756_at	LOC283431 Chr:12q23.3
83	33	G388	205394_at	CHEK1 Chr:11q24-q24
84	42	G388	209642_at	BUB1 Chr:2q14
85	57	G388	218755_at	KIF20A Chr:5q31
86	55	G388	218662_s_at	HCAP-G Chr:4p16-p15
87	84	G388	229490_s_at	IQGAP3 Chr:1q23.1
88	31	G388	205034_at	CCNE2 Chr:8q22.1
89	39	G388	208079_s_at	STK6 Chr:20q13.2-q13.3
90	26		204510_at	CDC7 Chr:1p22
91	78		227350_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:45:44

G26_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC