G26_using_S2

Super-paramagnetic Clustering of 91 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=30)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	7		202589_at	TYMS Chr:18p11.32
2	22		204170_s_at	CKS2 Chr:9q22
3	32		205046_at	CENPE Chr:4q24-q25
4	12		203362_s_at	MAD2L1 Chr:4q27
5	36		206632_s_at	APOBEC3B Chr:22q13.1-q13.2
6	26		204510_at	CDC7 Chr:1p22
7	42		209642_at	BUB1 Chr:2q14
8	85		229551_x_at	ZNF367 Chr:9q22
9	6	G385	202580_x_at	FOXM1 Chr:12p13
10	20	G385	204146_at	PIR51 Chr:12p13.2-p13.1
11	41	G384 G385	209172_s_at	CENPF Chr:1q32-q41
12	17	G384 G385	204023_at	RFC4 Chr:3q27
13	14	G384 G385	203560_at	GGH Chr:8q12.2
14	33	G384 G385	205394_at	CHEK1 Chr:11q24-q24
15	4	G384 G385	202107_s_at	MCM2 Chr:3q21
16	10	G384 G385	203213_at	CDC2 Chr:10q21.1
17	16	G384 G385	203764_at	DLG7 Chr:14q22.2
18	18	G384 G385	204026_s_at	ZWINT Chr:10q21-q22
19	23	G384 G385	204240_s_at	SMC2L1 Chr:9q31.2
20	28	G384 G385	204822_at	TTK Chr:6q13-q21
21	5	G384 G385	202503_s_at	KIAA0101 Chr:15q22.1
22	8	G384 G385	202705_at	CCNB2 Chr:15q21.3
23	30	G384 G385	204962_s_at	CENPA Chr:2p24-p21
24	13	G384 G385	203554_x_at	PTTG1 Chr:5q35.1
25	31	G384 G385	205034_at	CCNE2 Chr:8q22.1
26	29	G384 G385	204825_at	MELK Chr:9p13.1
27	37	G384 G385	207165_at	HMMR Chr:5q33.2-qter
28	44	G384 G385	210052_s_at	TPX2 Chr:20q11.2
29	49	G384 G385	214710_s_at	CCNB1 Chr:5q12
30	2	G384 G385	201292_at	TOP2A Chr:17q21-q22
31	11	G384 G385	203358_s_at	EZH2 Chr:7q35-q36
32	53	G384 G385	218355_at	KIF4A Chr:xq13.1
33	59	G384 G385	218883_s_at	KLIP1 Chr:4q35.1
34	64	G384 G385	220239_at	KLHL7 Chr:7p15.3
35	67	G384 G385	222680_s_at	RAMP Chr:1q32.1-q32.2
36	90	G384 G385	238756_at	LOC283431 Chr:12q23.3
37	82	G384 G385	228729_at	CCNB1 Chr:5q12
38	3	G384 G385	201890_at	RRM2 Chr:2p25-p24
39	1	G384 G385	201291_s_at	TOP2A Chr:17q21-q22
40	15	G384 G385	203755_at	BUB1B Chr:15q15
41	19	G384 G385	204033_at	TRIP13 Chr:5p15.33
42	25	G384 G385	204444_at	KIF11 Chr:10q24.1
43	78	G384 G385	227350_at	--- ---
44	38	G384 G385	207828_s_at	CENPF Chr:1q32-q41
45	51	G384 G385	218009_s_at	PRC1 Chr:15q26.1
46	52	G384 G385	218039_at	NUSAP1 Chr:15q14
47	54	G384 G385	218585_s_at	RAMP Chr:1q32.1-q32.2
48	39	G384 G385	208079_s_at	STK6 Chr:20q13.2-q13.3
49	46	G384 G385	213007_at	FLJ10719 Chr:15q25-q26
50	21	G384 G385	204162_at	KNTC2 Chr:18p11.31
51	43	G384 G385	209773_s_at	RRM2 Chr:2p25-p24
52	47	G384 G385	213226_at	PMSCL1 Chr:4q27
53	72	G384 G385	223381_at	CDCA1 Chr:1q23.2
54	81	G384 G385	228323_at	AF15Q14 Chr:15q14
55	60	G384 G385	219148_at	TOPK Chr:8p21.2
56	61	G384 G385	219306_at	KNSL7 Chr:3p21.32
57	62	G384 G385	219787_s_at	ECT2 Chr:3q26.1-q26.2
58	63	G384 G385	219918_s_at	ASPM Chr:1q31
59	70	G384 G385	222848_at	FKSG14 Chr:5p15.2-q12.3
60	76	G384 G385	226980_at	XTP1 Chr:5q12.1
61	84	G384 G385	229490_s_at	IQGAP3 Chr:1q23.1
62	71	G384 G385	223229_at	HSPC150 Chr:1q32.1
63	83	G384 G385	229305_at	KLIP1 Chr:4q35.1
64	50	G384 G385	216237_s_at	MCM5 Chr:22q13.1
65	45	G384 G385	210559_s_at	CDC2 Chr:10q21.1
66	79	G384 G385	228033_at	E2F7 Chr:12q21.1
67	35	G384 G385	206102_at	KIAA0186 Chr:20p11.21
68	91	G384 G385	242560_at	FANCD2 Chr:3p26
69	69	G384 G385	222843_at	FIGNL1 Chr:7p12.2
70	55	G384 G385	218662_s_at	HCAP-G Chr:4p16-p15
71	27	G385	204641_at	NEK2 Chr:1q32.2-q41
72	48	G385	213906_at	MYBL1 Chr:8q22
73	57	G385	218755_at	KIF20A Chr:5q31
74	58	G385	218875_s_at	FBXO5 Chr:6q25-q26
75	9	G385	202870_s_at	CDC20 Chr:1p34.1
76	56	G385	218663_at	HCAP-G Chr:4p16-p15
77	77	G385	227249_at	NDE1 Chr:16p13.11
78	68	G385	222740_at	ATAD2 Chr:8q24.13
79	86	G385	230165_at	SGOL2 Chr:2q33.2
80	73		224428_s_at	CDCA7 Chr:2q31
81	80		228273_at	FLJ11029 Chr:17q23.2
82	88		235425_at	SGOL2 Chr:2q33.2
83	89		236641_at	KIF14 Chr:1pter-q31.3
84	24		204244_s_at	ASK Chr:7q21.3
85	66		222077_s_at	RACGAP1 Chr:12q13.12
86	34		205967_at	HIST1H4C Chr:6p21.3
87	65		222039_at	LOC146909 Chr:17q21.31
88	74		225834_at	MGC57827 ---
89	40		208808_s_at	HMGB2 Chr:4q31
90	75		226319_s_at	THOC4 Chr:17q25.3
91	87		232315_at	LOC400713 Chr:19q13.41

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	30
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:41:43

G26_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=30)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC