G26_using_S1

Super-paramagnetic Clustering of 91 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	57		218755_at	KIF20A Chr:5q31
2	84		229490_s_at	IQGAP3 Chr:1q23.1
3	9		202870_s_at	CDC20 Chr:1p34.1
4	50		216237_s_at	MCM5 Chr:22q13.1
5	14	G383	203560_at	GGH Chr:8q12.2
6	55	G383	218662_s_at	HCAP-G Chr:4p16-p15
7	56	G383	218663_at	HCAP-G Chr:4p16-p15
8	12	G383	203362_s_at	MAD2L1 Chr:4q27
9	58	G383	218875_s_at	FBXO5 Chr:6q25-q26
10	62	G383	219787_s_at	ECT2 Chr:3q26.1-q26.2
11	24	G383	204244_s_at	ASK Chr:7q21.3
12	77	G383	227249_at	NDE1 Chr:16p13.11
13	11	G382 G383	203358_s_at	EZH2 Chr:7q35-q36
14	72	G382 G383	223381_at	CDCA1 Chr:1q23.2
15	63	G382 G383	219918_s_at	ASPM Chr:1q31
16	47	G382 G383	213226_at	PMSCL1 Chr:4q27
17	89	G382 G383	236641_at	KIF14 Chr:1pter-q31.3
18	76	G382 G383	226980_at	XTP1 Chr:5q12.1
19	6	G382 G383	202580_x_at	FOXM1 Chr:12p13
20	66	G382 G383	222077_s_at	RACGAP1 Chr:12q13.12
21	20	G382 G383	204146_at	PIR51 Chr:12p13.2-p13.1
22	41	G382 G383	209172_s_at	CENPF Chr:1q32-q41
23	81	G382 G383	228323_at	AF15Q14 Chr:15q14
24	21	G382 G383	204162_at	KNTC2 Chr:18p11.31
25	7	G382 G383	202589_at	TYMS Chr:18p11.32
26	29	G382 G383	204825_at	MELK Chr:9p13.1
27	10	G382 G383	203213_at	CDC2 Chr:10q21.1
28	22	G382 G383	204170_s_at	CKS2 Chr:9q22
29	45	G382 G383	210559_s_at	CDC2 Chr:10q21.1
30	18	G382 G383	204026_s_at	ZWINT Chr:10q21-q22
31	46	G382 G383	213007_at	FLJ10719 Chr:15q25-q26
32	60	G382 G383	219148_at	TOPK Chr:8p21.2
33	25	G382 G383	204444_at	KIF11 Chr:10q24.1
34	65	G382 G383	222039_at	LOC146909 Chr:17q21.31
35	70	G382 G383	222848_at	FKSG14 Chr:5p15.2-q12.3
36	39	G382 G383	208079_s_at	STK6 Chr:20q13.2-q13.3
37	80	G382 G383	228273_at	FLJ11029 Chr:17q23.2
38	1	G382 G383	201291_s_at	TOP2A Chr:17q21-q22
39	3	G382 G383	201890_at	RRM2 Chr:2p25-p24
40	2	G382 G383	201292_at	TOP2A Chr:17q21-q22
41	52	G382 G383	218039_at	NUSAP1 Chr:15q14
42	15	G382 G383	203755_at	BUB1B Chr:15q15
43	59	G382 G383	218883_s_at	KLIP1 Chr:4q35.1
44	83	G382 G383	229305_at	KLIP1 Chr:4q35.1
45	8	G382 G383	202705_at	CCNB2 Chr:15q21.3
46	5	G382 G383	202503_s_at	KIAA0101 Chr:15q22.1
47	90	G382 G383	238756_at	LOC283431 Chr:12q23.3
48	61	G382 G383	219306_at	KNSL7 Chr:3p21.32
49	68	G382 G383	222740_at	ATAD2 Chr:8q24.13
50	35	G382 G383	206102_at	KIAA0186 Chr:20p11.21
51	16	G382 G383	203764_at	DLG7 Chr:14q22.2
52	38	G382 G383	207828_s_at	CENPF Chr:1q32-q41
53	44	G382 G383	210052_s_at	TPX2 Chr:20q11.2
54	53	G382 G383	218355_at	KIF4A Chr:xq13.1
55	13	G382 G383	203554_x_at	PTTG1 Chr:5q35.1
56	49	G382 G383	214710_s_at	CCNB1 Chr:5q12
57	51	G382 G383	218009_s_at	PRC1 Chr:15q26.1
58	82	G382 G383	228729_at	CCNB1 Chr:5q12
59	27	G382 G383	204641_at	NEK2 Chr:1q32.2-q41
60	54	G382 G383	218585_s_at	RAMP Chr:1q32.1-q32.2
61	67	G382 G383	222680_s_at	RAMP Chr:1q32.1-q32.2
62	86	G382 G383	230165_at	SGOL2 Chr:2q33.2
63	28	G382 G383	204822_at	TTK Chr:6q13-q21
64	30	G382 G383	204962_s_at	CENPA Chr:2p24-p21
65	32	G382 G383	205046_at	CENPE Chr:4q24-q25
66	42	G382 G383	209642_at	BUB1 Chr:2q14
67	91	G382 G383	242560_at	FANCD2 Chr:3p26
68	37	G382 G383	207165_at	HMMR Chr:5q33.2-qter
69	43	G382 G383	209773_s_at	RRM2 Chr:2p25-p24
70	40	G382 G383	208808_s_at	HMGB2 Chr:4q31
71	19	G383	204033_at	TRIP13 Chr:5p15.33
72	71	G383	223229_at	HSPC150 Chr:1q32.1
73	74	G383	225834_at	MGC57827 ---
74	73	G383	224428_s_at	CDCA7 Chr:2q31
75	88	G383	235425_at	SGOL2 Chr:2q33.2
76	75	G383	226319_s_at	THOC4 Chr:17q25.3
77	79	G383	228033_at	E2F7 Chr:12q21.1
78	48		213906_at	MYBL1 Chr:8q22
79	64		220239_at	KLHL7 Chr:7p15.3
80	36		206632_s_at	APOBEC3B Chr:22q13.1-q13.2
81	23		204240_s_at	SMC2L1 Chr:9q31.2
82	4		202107_s_at	MCM2 Chr:3q21
83	26		204510_at	CDC7 Chr:1p22
84	78		227350_at	--- ---
85	31		205034_at	CCNE2 Chr:8q22.1
86	85		229551_x_at	ZNF367 Chr:9q22
87	17		204023_at	RFC4 Chr:3q27
88	33		205394_at	CHEK1 Chr:11q24-q24
89	69		222843_at	FIGNL1 Chr:7p12.2
90	34		205967_at	HIST1H4C Chr:6p21.3
91	87		232315_at	LOC400713 Chr:19q13.41

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:39:02

G26_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC