G25_using_S3

Super-paramagnetic Clustering of 18 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	3		203373_at		SOCS2 Chr:12q
2	14		232925_at		--- ---
3	8		228307_at		EMILIN3 Chr:20q11.2-q12
4	6		210135_s_at		SHOX2 Chr:3q25-q26.1
5	12		232541_at		--- ---
6	15		232935_at		--- ---
7	16		233025_at		PDZK3 Chr:5p13.3
8	7		224999_at		--- ---
9	2		201984_s_at		EGFR Chr:7p12
10	9		232120_at		--- ---
11	18		243327_at		--- ---
12	5		209692_at		EYA2 Chr:20q13.1
13	1		201983_s_at		EGFR Chr:7p12
14	13		232882_at		--- ---
15	4		203484_at		SEC61G Chr:7p11.2
16	11		232539_at		--- ---
17	17		233044_at		--- ---
18	10		232224_at		MASP1 Chr:3q27-q28

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:31:59