G25_using_S2

Super-paramagnetic Clustering of 18 points in a 4 dimensional space.

Each point is a row.

Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

    • PCA of points

     

    K Mutual Nearest Neighbors (K=4)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes
    16 210135_s_atSHOX2 Chr:3q25-q26.1
    24 203484_atSEC61G Chr:7p11.2
    311 232539_at--- ---
    43 203373_atSOCS2 Chr:12q
    510 232224_atMASP1 Chr:3q27-q28
    65 209692_atEYA2 Chr:20q13.1
    78 228307_atEMILIN3 Chr:20q11.2-q12
    815 232935_at--- ---
    913 232882_at--- ---
    1018 243327_at--- ---
    1114 232925_at--- ---
    127 224999_at--- ---
    1317 233044_at--- ---
    149 232120_at--- ---
    152 201984_s_atEGFR Chr:7p12
    1612 232541_at--- ---
    171 201983_s_atEGFR Chr:7p12
    1816 233025_atPDZK3 Chr:5p13.3

    Samples Names
    111357.cel
    221795R.cel
    331869RR.cel
    4455.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data

    Parameters for SPC

    K (nearest neighbors)4
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3
    Created by SPC_HTML_REPORT on 12-Aug-2004 04:30:44