G24_using_S6

Super-paramagnetic Clustering of 134 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	27		203535_at	S100A9 Chr:1q21
2	20		202917_s_at	S100A8 Chr:1q21
3	49		205681_at	BCL2A1 Chr:15q24.3
4	44		204834_at	FGL2 Chr:7q11.23
5	4		1552386_at	FLJ33641 Chr:5q12.1
6	116		227265_at	--- ---
7	3		1552367_a_at	SCIN Chr:7p21.3
8	2		1552365_at	SCIN Chr:7p21.3
9	79		213537_at	HLA-DPA1 Chr:6p21.3
10	73		211990_at	HLA-DPA1 Chr:6p21.3
11	46		204971_at	CSTA Chr:3q21
12	120		228532_at	MGC24133 Chr:1p13.2
13	97		219890_at	CLECSF5 Chr:7q33
14	70		211654_x_at	HLA-DQB1 Chr:6p21.3
15	78		212998_x_at	HLA-DQB1 Chr:6p21.3
16	69		211429_s_at	--- ---
17	17		202833_s_at	SERPINA1 Chr:14q32.1
18	54		206111_at	RNASE2 Chr:14q24-q31
19	25		203305_at	F13A1 Chr:6p25.3-p24.3
20	39		204438_at	MRC1 Chr:10p13
21	12		201631_s_at	IER3 Chr:6p21.3
22	53		205997_at	ADAM28 Chr:8p21.2
23	105		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
24	123		229723_at	TAGAP Chr:6q25.3
25	72		211742_s_at	EVI2B Chr:17q11.2
26	130		232843_s_at	DOCK8 Chr:9p24.3
27	112		225502_at	DOCK8 Chr:9p24.3
28	108		223620_at	GPR34 Chr:xp11.4-p11.3
29	101		220491_at	HAMP Chr:19q13.1
30	48		205119_s_at	FPR1 Chr:19q13.4
31	109		223660_at	AD026 Chr:1p13.2
32	34		204150_at	STAB1 Chr:3p21.31
33	134		38487_at	STAB1 Chr:3p21.31
34	30		203665_at	HMOX1 Chr:22q13.1
35	125		230252_at	GPR92 Chr:12p13.31
36	128		230925_at	APBB1IP Chr:10p12.2
37	5	G381	1552807_a_at	SIGLEC10 Chr:19q13.3
38	61	G377 G381	208894_at	HLA-DRA Chr:6p21.3
39	68	G377 G381	210982_s_at	HLA-DRA Chr:6p21.3
40	60	G377 G381	208306_x_at	HLA-DRB3 Chr:6p21.3
41	77	G377 G381	212671_s_at	HLA-DQA1 Chr:6p21.3
42	63	G377 G381	209312_x_at	HLA-DRB1 Chr:6p21.3
43	85	G377 G381	215193_x_at	HLA-DRB3 Chr:6p21.3
44	104	G377 G381	221491_x_at	HLA-DRB3 Chr:6p21.3
45	42	G377 G381	204670_x_at	HLA-DRB3 Chr:6p21.3
46	74	G377 G381	211991_s_at	HLA-DPA1 Chr:6p21.3
47	9	G377 G381	201137_s_at	HLA-DPB1 Chr:6p21.3
48	65	G377 G381	209823_x_at	HLA-DQB1 Chr:6p21.3
49	71	G377 G381	211656_x_at	HLA-DQB1 Chr:6p21.3
50	24	G377 G381	203290_at	HLA-DQA1 Chr:6p21.3
51	64	G377 G381	209619_at	CD74 Chr:5q32
52	89	G377 G381	217478_s_at	HLA-DMA Chr:6p21.3
53	29	G381	203645_s_at	CD163 Chr:12p13.3
54	84	G381	215049_x_at	CD163 Chr:12p13.3
55	132	G381	236028_at	IBSP Chr:4q21-q25
56	93	G380 G381	218854_at	SART2 Chr:6q22
57	62	G380 G381	208944_at	TGFBR2 Chr:3p22
58	87	G380 G381	216950_s_at	FCGR1A Chr:1q21.2-q21.3
59	82	G380 G381	214511_x_at	FCGR1A Chr:1q21.2-q21.3
60	124	G380 G381	229937_x_at	LILRB1 Chr:19q13.4
61	96	G379 G380 G381	219666_at	MS4A6A Chr:11q12.1
62	1	G379 G380 G381	1552316_a_at	IMAP1 Chr:7q36.1
63	127	G379 G380 G381	230550_at	MS4A6A Chr:11q12.1
64	95	G379 G380 G381	219607_s_at	MS4A4A Chr:11q12
65	106	G379 G380 G381	223280_x_at	MS4A6A Chr:11q12.1
66	110	G379 G380 G381	224356_x_at	MS4A6A Chr:11q12.1
67	45	G379 G380 G381	204959_at	MNDA Chr:1q22
68	66	G379 G380 G381	210176_at	TLR1 Chr:4p14
69	32	G379 G380 G381	204007_at	FCGR3A Chr:1q23
70	59	G379 G380 G381	208146_s_at	CPVL Chr:7p15-p14
71	81	G379 G380 G381	214467_at	GPR65 Chr:14q31-q32.1
72	31	G379 G380 G381	204006_s_at	FCGR3A Chr:1q23
73	67	G379 G380 G381	210314_x_at	TNFSF13 Chr:17p13.1
74	129	G379 G380 G381	232617_at	CTSS Chr:1q21
75	8	G379 G380 G381	1555728_a_at	MS4A4A Chr:11q12
76	14	G378 G379 G380 G381	201743_at	CD14 Chr:5q31.1
77	7	G378 G379 G380 G381	1555349_a_at	ITGB2 Chr:21q22.3
78	18	G378 G379 G380 G381	202901_x_at	CTSS Chr:1q21
79	19	G378 G379 G380 G381	202902_s_at	CTSS Chr:1q21
80	6	G378 G379 G380 G381	1554899_s_at	FCER1G Chr:1q23
81	36	G378 G379 G380 G381	204232_at	FCER1G Chr:1q23
82	35	G378 G379 G380 G381	204174_at	ALOX5AP Chr:13q12
83	58	G378 G379 G380 G381	208018_s_at	HCK Chr:20q11-q12
84	10	G378 G379 G380 G381	201422_at	IFI30 Chr:19p13.1
85	94	G378 G379 G380 G381	219386_s_at	SLAMF8 Chr:1q23.1
86	88	G378 G379 G380 G381	217388_s_at	KYNU Chr:2q22.3
87	15	G378 G379 G380 G381	202546_at	VAMP8 Chr:2p12-p11.2
88	13	G378 G379 G380 G381	201721_s_at	LAPTM5 Chr:1p34
89	16	G378 G379 G380 G381	202803_s_at	ITGB2 Chr:21q22.3
90	22	G378 G379 G380 G381	202957_at	HCLS1 Chr:3q13
91	26	G378 G379 G380 G381	203416_at	CD53 Chr:1p13
92	33	G378 G379 G380 G381	204122_at	TYROBP Chr:19q13.1
93	37	G378 G379 G380 G381	204416_x_at	APOC1 Chr:19q13.2
94	83	G378 G379 G380 G381	214770_at	MSR1 Chr:8p22
95	122	G378 G379 G380 G381	229560_at	TLR8 Chr:xp22
96	76	G378 G379 G380 G381	212588_at	PTPRC Chr:1q31-q32
97	102	G378 G379 G380 G381	220532_s_at	LR8 Chr:7q36.1
98	43	G379 G380 G381	204787_at	Z39IG Chr:xq12-q13.3
99	21	G379 G380 G381	202953_at	C1QB Chr:1p36.3-p34.1
100	111	G379 G380 G381	225353_s_at	C1QG Chr:1p36.11
101	92	G379 G380 G381	218232_at	C1QA Chr:1p36.3-p34.1
102	131	G379 G380 G381	234987_at	--- Chr:20q11.23
103	56	G379 G380 G381	206584_at	LY96 Chr:8q13.3
104	75	G380 G381	212543_at	AIM1 Chr:6q21
105	91	G380 G381	217983_s_at	RNASET2 Chr:6q27
106	121	G380 G381	229074_at	EHD4 Chr:15q11.1
107	28	G381	203561_at	FCGR2A Chr:1q23
108	80	G381	213566_at	RNASE6 Chr:14q11.2
109	51	G381	205890_s_at	UBD Chr:6p21.3
110	23		203104_at	CSF1R Chr:5q33-q35
111	41		204563_at	SELL Chr:1q23-q25
112	90		217767_at	C3 Chr:19p13.3-p13.2
113	40		204446_s_at	ALOX5 Chr:10q11.2
114	50		205786_s_at	ITGAM Chr:16p11.2
115	115		226068_at	SYK Chr:9q22
116	38		204430_s_at	SLC2A5 Chr:1p36.2
117	99		220146_at	TLR7 Chr:xp22.3
118	133		244434_at	--- ---
119	118		227346_at	ZNFN1A1 Chr:7p13-p11.1
120	55		206420_at	IGSF6 Chr:16p12-p13
121	126		230391_at	--- ---
122	117		227266_s_at	FYB Chr:5p13.1
123	107		223343_at	MS4A7 Chr:11q12
124	103		221210_s_at	NPL Chr:1q25
125	100		220330_s_at	SAMSN1 Chr:21q11
126	47		205027_s_at	MAP3K8 Chr:10p12.1
127	86		216233_at	CD163 Chr:12p13.3
128	11		201487_at	CTSC Chr:11q14.1-q14.3
129	113		225646_at	CTSC Chr:11q14.1-q14.3
130	114		225647_s_at	CTSC Chr:11q14.1-q14.3
131	57		207655_s_at	BLNK Chr:10q23.2-q23.33
132	98		220005_at	GPR86 Chr:3q24
133	52		205898_at	CX3CR1 Chr:3p21.3
134	119		227889_at	CAPNS2 Chr:16q13

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:28:13

G24_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC