G24_using_S5

Super-paramagnetic Clustering of 134 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	44		204834_at	FGL2 Chr:7q11.23
2	4		1552386_at	FLJ33641 Chr:5q12.1
3	116		227265_at	--- ---
4	27		203535_at	S100A9 Chr:1q21
5	20		202917_s_at	S100A8 Chr:1q21
6	49		205681_at	BCL2A1 Chr:15q24.3
7	25		203305_at	F13A1 Chr:6p25.3-p24.3
8	39		204438_at	MRC1 Chr:10p13
9	12		201631_s_at	IER3 Chr:6p21.3
10	69		211429_s_at	--- ---
11	17		202833_s_at	SERPINA1 Chr:14q32.1
12	34		204150_at	STAB1 Chr:3p21.31
13	134		38487_at	STAB1 Chr:3p21.31
14	30		203665_at	HMOX1 Chr:22q13.1
15	3		1552367_a_at	SCIN Chr:7p21.3
16	2		1552365_at	SCIN Chr:7p21.3
17	5		1552807_a_at	SIGLEC10 Chr:19q13.3
18	23		203104_at	CSF1R Chr:5q33-q35
19	41		204563_at	SELL Chr:1q23-q25
20	87	G376	216950_s_at	FCGR1A Chr:1q21.2-q21.3
21	82	G376	214511_x_at	FCGR1A Chr:1q21.2-q21.3
22	124	G376	229937_x_at	LILRB1 Chr:19q13.4
23	89	G374 G375 G376	217478_s_at	HLA-DMA Chr:6p21.3
24	76	G374 G375 G376	212588_at	PTPRC Chr:1q31-q32
25	61	G374 G375 G376	208894_at	HLA-DRA Chr:6p21.3
26	64	G374 G375 G376	209619_at	CD74 Chr:5q32
27	68	G374 G375 G376	210982_s_at	HLA-DRA Chr:6p21.3
28	60	G374 G375 G376	208306_x_at	HLA-DRB3 Chr:6p21.3
29	85	G374 G375 G376	215193_x_at	HLA-DRB3 Chr:6p21.3
30	63	G374 G375 G376	209312_x_at	HLA-DRB1 Chr:6p21.3
31	42	G374 G375 G376	204670_x_at	HLA-DRB3 Chr:6p21.3
32	74	G374 G375 G376	211991_s_at	HLA-DPA1 Chr:6p21.3
33	65	G374 G375 G376	209823_x_at	HLA-DQB1 Chr:6p21.3
34	9	G374 G375 G376	201137_s_at	HLA-DPB1 Chr:6p21.3
35	71	G374 G375 G376	211656_x_at	HLA-DQB1 Chr:6p21.3
36	104	G374 G375 G376	221491_x_at	HLA-DRB3 Chr:6p21.3
37	77	G374 G375 G376	212671_s_at	HLA-DQA1 Chr:6p21.3
38	79	G374 G375 G376	213537_at	HLA-DPA1 Chr:6p21.3
39	73	G374 G375 G376	211990_at	HLA-DPA1 Chr:6p21.3
40	70	G374 G375 G376	211654_x_at	HLA-DQB1 Chr:6p21.3
41	78	G374 G375 G376	212998_x_at	HLA-DQB1 Chr:6p21.3
42	11	G375 G376	201487_at	CTSC Chr:11q14.1-q14.3
43	31	G375 G376	204006_s_at	FCGR3A Chr:1q23
44	32	G375 G376	204007_at	FCGR3A Chr:1q23
45	15	G375 G376	202546_at	VAMP8 Chr:2p12-p11.2
46	10	G375 G376	201422_at	IFI30 Chr:19p13.1
47	94	G375 G376	219386_s_at	SLAMF8 Chr:1q23.1
48	36	G375 G376	204232_at	FCER1G Chr:1q23
49	88	G375 G376	217388_s_at	KYNU Chr:2q22.3
50	13	G375 G376	201721_s_at	LAPTM5 Chr:1p34
51	7	G375 G376	1555349_a_at	ITGB2 Chr:21q22.3
52	16	G375 G376	202803_s_at	ITGB2 Chr:21q22.3
53	26	G375 G376	203416_at	CD53 Chr:1p13
54	22	G375 G376	202957_at	HCLS1 Chr:3q13
55	33	G375 G376	204122_at	TYROBP Chr:19q13.1
56	91	G375 G376	217983_s_at	RNASET2 Chr:6q27
57	83	G375 G376	214770_at	MSR1 Chr:8p22
58	40	G375 G376	204446_s_at	ALOX5 Chr:10q11.2
59	90	G375 G376	217767_at	C3 Chr:19p13.3-p13.2
60	6	G375 G376	1554899_s_at	FCER1G Chr:1q23
61	58	G375 G376	208018_s_at	HCK Chr:20q11-q12
62	14	G375 G376	201743_at	CD14 Chr:5q31.1
63	43	G375 G376	204787_at	Z39IG Chr:xq12-q13.3
64	92	G375 G376	218232_at	C1QA Chr:1p36.3-p34.1
65	21	G375 G376	202953_at	C1QB Chr:1p36.3-p34.1
66	111	G375 G376	225353_s_at	C1QG Chr:1p36.11
67	131	G375 G376	234987_at	--- Chr:20q11.23
68	18	G375 G376	202901_x_at	CTSS Chr:1q21
69	19	G375 G376	202902_s_at	CTSS Chr:1q21
70	67	G375 G376	210314_x_at	TNFSF13 Chr:17p13.1
71	129	G375 G376	232617_at	CTSS Chr:1q21
72	35	G375 G376	204174_at	ALOX5AP Chr:13q12
73	122	G375 G376	229560_at	TLR8 Chr:xp22
74	8	G375 G376	1555728_a_at	MS4A4A Chr:11q12
75	28	G375 G376	203561_at	FCGR2A Chr:1q23
76	80	G375 G376	213566_at	RNASE6 Chr:14q11.2
77	95	G375 G376	219607_s_at	MS4A4A Chr:11q12
78	106	G375 G376	223280_x_at	MS4A6A Chr:11q12.1
79	110	G375 G376	224356_x_at	MS4A6A Chr:11q12.1
80	1	G375 G376	1552316_a_at	IMAP1 Chr:7q36.1
81	96	G375 G376	219666_at	MS4A6A Chr:11q12.1
82	127	G375 G376	230550_at	MS4A6A Chr:11q12.1
83	56	G375 G376	206584_at	LY96 Chr:8q13.3
84	66	G375 G376	210176_at	TLR1 Chr:4p14
85	45	G375 G376	204959_at	MNDA Chr:1q22
86	81	G375 G376	214467_at	GPR65 Chr:14q31-q32.1
87	59	G375 G376	208146_s_at	CPVL Chr:7p15-p14
88	24	G375 G376	203290_at	HLA-DQA1 Chr:6p21.3
89	102	G375 G376	220532_s_at	LR8 Chr:7q36.1
90	54	G376	206111_at	RNASE2 Chr:14q24-q31
91	75	G376	212543_at	AIM1 Chr:6q21
92	37		204416_x_at	APOC1 Chr:19q13.2
93	113		225646_at	CTSC Chr:11q14.1-q14.3
94	114		225647_s_at	CTSC Chr:11q14.1-q14.3
95	130		232843_s_at	DOCK8 Chr:9p24.3
96	112		225502_at	DOCK8 Chr:9p24.3
97	105		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
98	53		205997_at	ADAM28 Chr:8p21.2
99	72		211742_s_at	EVI2B Chr:17q11.2
100	55		206420_at	IGSF6 Chr:16p12-p13
101	123		229723_at	TAGAP Chr:6q25.3
102	126		230391_at	--- ---
103	118		227346_at	ZNFN1A1 Chr:7p13-p11.1
104	50		205786_s_at	ITGAM Chr:16p11.2
105	115		226068_at	SYK Chr:9q22
106	108		223620_at	GPR34 Chr:xp11.4-p11.3
107	99		220146_at	TLR7 Chr:xp22.3
108	133		244434_at	--- ---
109	121		229074_at	EHD4 Chr:15q11.1
110	29		203645_s_at	CD163 Chr:12p13.3
111	84		215049_x_at	CD163 Chr:12p13.3
112	132		236028_at	IBSP Chr:4q21-q25
113	62		208944_at	TGFBR2 Chr:3p22
114	93		218854_at	SART2 Chr:6q22
115	125		230252_at	GPR92 Chr:12p13.31
116	128		230925_at	APBB1IP Chr:10p12.2
117	117		227266_s_at	FYB Chr:5p13.1
118	107		223343_at	MS4A7 Chr:11q12
119	103		221210_s_at	NPL Chr:1q25
120	100		220330_s_at	SAMSN1 Chr:21q11
121	51		205890_s_at	UBD Chr:6p21.3
122	38		204430_s_at	SLC2A5 Chr:1p36.2
123	48		205119_s_at	FPR1 Chr:19q13.4
124	109		223660_at	AD026 Chr:1p13.2
125	97		219890_at	CLECSF5 Chr:7q33
126	46		204971_at	CSTA Chr:3q21
127	120		228532_at	MGC24133 Chr:1p13.2
128	101		220491_at	HAMP Chr:19q13.1
129	47		205027_s_at	MAP3K8 Chr:10p12.1
130	86		216233_at	CD163 Chr:12p13.3
131	52		205898_at	CX3CR1 Chr:3p21.3
132	57		207655_s_at	BLNK Chr:10q23.2-q23.33
133	98		220005_at	GPR86 Chr:3q24
134	119		227889_at	CAPNS2 Chr:16q13

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:23:02

G24_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC