G24_using_S4

Super-paramagnetic Clustering of 134 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	44		204834_at	FGL2 Chr:7q11.23
2	4		1552386_at	FLJ33641 Chr:5q12.1
3	116		227265_at	--- ---
4	27		203535_at	S100A9 Chr:1q21
5	20		202917_s_at	S100A8 Chr:1q21
6	49		205681_at	BCL2A1 Chr:15q24.3
7	3		1552367_a_at	SCIN Chr:7p21.3
8	2		1552365_at	SCIN Chr:7p21.3
9	25		203305_at	F13A1 Chr:6p25.3-p24.3
10	39		204438_at	MRC1 Chr:10p13
11	69		211429_s_at	--- ---
12	17		202833_s_at	SERPINA1 Chr:14q32.1
13	34		204150_at	STAB1 Chr:3p21.31
14	134		38487_at	STAB1 Chr:3p21.31
15	30		203665_at	HMOX1 Chr:22q13.1
16	113		225646_at	CTSC Chr:11q14.1-q14.3
17	11		201487_at	CTSC Chr:11q14.1-q14.3
18	114		225647_s_at	CTSC Chr:11q14.1-q14.3
19	38		204430_s_at	SLC2A5 Chr:1p36.2
20	5	G372 G373	1552807_a_at	SIGLEC10 Chr:19q13.3
21	87	G372 G373	216950_s_at	FCGR1A Chr:1q21.2-q21.3
22	82	G372 G373	214511_x_at	FCGR1A Chr:1q21.2-q21.3
23	124	G372 G373	229937_x_at	LILRB1 Chr:19q13.4
24	76	G370 G372 G373	212588_at	PTPRC Chr:1q31-q32
25	61	G370 G372 G373	208894_at	HLA-DRA Chr:6p21.3
26	64	G370 G372 G373	209619_at	CD74 Chr:5q32
27	68	G370 G372 G373	210982_s_at	HLA-DRA Chr:6p21.3
28	60	G370 G372 G373	208306_x_at	HLA-DRB3 Chr:6p21.3
29	85	G370 G372 G373	215193_x_at	HLA-DRB3 Chr:6p21.3
30	63	G370 G372 G373	209312_x_at	HLA-DRB1 Chr:6p21.3
31	42	G370 G372 G373	204670_x_at	HLA-DRB3 Chr:6p21.3
32	74	G370 G372 G373	211991_s_at	HLA-DPA1 Chr:6p21.3
33	65	G370 G372 G373	209823_x_at	HLA-DQB1 Chr:6p21.3
34	71	G370 G372 G373	211656_x_at	HLA-DQB1 Chr:6p21.3
35	9	G370 G372 G373	201137_s_at	HLA-DPB1 Chr:6p21.3
36	70	G370 G372 G373	211654_x_at	HLA-DQB1 Chr:6p21.3
37	78	G370 G372 G373	212998_x_at	HLA-DQB1 Chr:6p21.3
38	79	G370 G372 G373	213537_at	HLA-DPA1 Chr:6p21.3
39	73	G370 G372 G373	211990_at	HLA-DPA1 Chr:6p21.3
40	77	G370 G372 G373	212671_s_at	HLA-DQA1 Chr:6p21.3
41	104	G370 G372 G373	221491_x_at	HLA-DRB3 Chr:6p21.3
42	24	G370 G372 G373	203290_at	HLA-DQA1 Chr:6p21.3
43	96	G372 G373	219666_at	MS4A6A Chr:11q12.1
44	1	G372 G373	1552316_a_at	IMAP1 Chr:7q36.1
45	127	G372 G373	230550_at	MS4A6A Chr:11q12.1
46	106	G372 G373	223280_x_at	MS4A6A Chr:11q12.1
47	110	G372 G373	224356_x_at	MS4A6A Chr:11q12.1
48	66	G372 G373	210176_at	TLR1 Chr:4p14
49	28	G371 G372 G373	203561_at	FCGR2A Chr:1q23
50	14	G371 G372 G373	201743_at	CD14 Chr:5q31.1
51	7	G371 G372 G373	1555349_a_at	ITGB2 Chr:21q22.3
52	13	G371 G372 G373	201721_s_at	LAPTM5 Chr:1p34
53	16	G371 G372 G373	202803_s_at	ITGB2 Chr:21q22.3
54	92	G371 G372 G373	218232_at	C1QA Chr:1p36.3-p34.1
55	21	G371 G372 G373	202953_at	C1QB Chr:1p36.3-p34.1
56	6	G371 G372 G373	1554899_s_at	FCER1G Chr:1q23
57	36	G371 G372 G373	204232_at	FCER1G Chr:1q23
58	111	G371 G372 G373	225353_s_at	C1QG Chr:1p36.11
59	10	G371 G372 G373	201422_at	IFI30 Chr:19p13.1
60	94	G371 G372 G373	219386_s_at	SLAMF8 Chr:1q23.1
61	15	G371 G372 G373	202546_at	VAMP8 Chr:2p12-p11.2
62	58	G371 G372 G373	208018_s_at	HCK Chr:20q11-q12
63	43	G371 G372 G373	204787_at	Z39IG Chr:xq12-q13.3
64	88	G371 G372 G373	217388_s_at	KYNU Chr:2q22.3
65	18	G371 G372 G373	202901_x_at	CTSS Chr:1q21
66	33	G371 G372 G373	204122_at	TYROBP Chr:19q13.1
67	26	G371 G372 G373	203416_at	CD53 Chr:1p13
68	22	G371 G372 G373	202957_at	HCLS1 Chr:3q13
69	83	G371 G372 G373	214770_at	MSR1 Chr:8p22
70	91	G371 G372 G373	217983_s_at	RNASET2 Chr:6q27
71	80	G371 G372 G373	213566_at	RNASE6 Chr:14q11.2
72	19	G371 G372 G373	202902_s_at	CTSS Chr:1q21
73	129	G371 G372 G373	232617_at	CTSS Chr:1q21
74	35	G371 G372 G373	204174_at	ALOX5AP Chr:13q12
75	31	G371 G372 G373	204006_s_at	FCGR3A Chr:1q23
76	32	G371 G372 G373	204007_at	FCGR3A Chr:1q23
77	81	G371 G372 G373	214467_at	GPR65 Chr:14q31-q32.1
78	46	G371 G372 G373	204971_at	CSTA Chr:3q21
79	120	G371 G372 G373	228532_at	MGC24133 Chr:1p13.2
80	122	G371 G372 G373	229560_at	TLR8 Chr:xp22
81	45	G371 G372 G373	204959_at	MNDA Chr:1q22
82	8	G371 G372 G373	1555728_a_at	MS4A4A Chr:11q12
83	95	G371 G372 G373	219607_s_at	MS4A4A Chr:11q12
84	67	G371 G372 G373	210314_x_at	TNFSF13 Chr:17p13.1
85	89	G372 G373	217478_s_at	HLA-DMA Chr:6p21.3
86	102	G372 G373	220532_s_at	LR8 Chr:7q36.1
87	59	G372 G373	208146_s_at	CPVL Chr:7p15-p14
88	23	G372 G373	203104_at	CSF1R Chr:5q33-q35
89	41	G372 G373	204563_at	SELL Chr:1q23-q25
90	121	G372 G373	229074_at	EHD4 Chr:15q11.1
91	40	G373	204446_s_at	ALOX5 Chr:10q11.2
92	90	G373	217767_at	C3 Chr:19p13.3-p13.2
93	50	G373	205786_s_at	ITGAM Chr:16p11.2
94	115	G373	226068_at	SYK Chr:9q22
95	118	G373	227346_at	ZNFN1A1 Chr:7p13-p11.1
96	105	G373	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
97	130	G373	232843_s_at	DOCK8 Chr:9p24.3
98	112	G373	225502_at	DOCK8 Chr:9p24.3
99	55	G373	206420_at	IGSF6 Chr:16p12-p13
100	37	G373	204416_x_at	APOC1 Chr:19q13.2
101	126	G373	230391_at	--- ---
102	103	G373	221210_s_at	NPL Chr:1q25
103	53	G373	205997_at	ADAM28 Chr:8p21.2
104	72	G373	211742_s_at	EVI2B Chr:17q11.2
105	123	G373	229723_at	TAGAP Chr:6q25.3
106	108	G373	223620_at	GPR34 Chr:xp11.4-p11.3
107	99	G373	220146_at	TLR7 Chr:xp22.3
108	131	G373	234987_at	--- Chr:20q11.23
109	133	G373	244434_at	--- ---
110	100	G373	220330_s_at	SAMSN1 Chr:21q11
111	107	G373	223343_at	MS4A7 Chr:11q12
112	117	G373	227266_s_at	FYB Chr:5p13.1
113	47	G373	205027_s_at	MAP3K8 Chr:10p12.1
114	54	G373	206111_at	RNASE2 Chr:14q24-q31
115	51	G373	205890_s_at	UBD Chr:6p21.3
116	56	G373	206584_at	LY96 Chr:8q13.3
117	29	G373	203645_s_at	CD163 Chr:12p13.3
118	84	G373	215049_x_at	CD163 Chr:12p13.3
119	12	G373	201631_s_at	IER3 Chr:6p21.3
120	132	G373	236028_at	IBSP Chr:4q21-q25
121	62	G373	208944_at	TGFBR2 Chr:3p22
122	93	G373	218854_at	SART2 Chr:6q22
123	86	G373	216233_at	CD163 Chr:12p13.3
124	75	G373	212543_at	AIM1 Chr:6q21
125	97	G373	219890_at	CLECSF5 Chr:7q33
126	48		205119_s_at	FPR1 Chr:19q13.4
127	101		220491_at	HAMP Chr:19q13.1
128	109		223660_at	AD026 Chr:1p13.2
129	125		230252_at	GPR92 Chr:12p13.31
130	128		230925_at	APBB1IP Chr:10p12.2
131	57		207655_s_at	BLNK Chr:10q23.2-q23.33
132	98		220005_at	GPR86 Chr:3q24
133	52		205898_at	CX3CR1 Chr:3p21.3
134	119		227889_at	CAPNS2 Chr:16q13

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:18:18

G24_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC