G24_using_S3

Super-paramagnetic Clustering of 134 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=42)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	24	203290_at	HLA-DQA1 Chr:6p21.3
2	39	204438_at	MRC1 Chr:10p13
3	65	209823_x_at	HLA-DQB1 Chr:6p21.3
4	20	202917_s_at	S100A8 Chr:1q21
5	51	205890_s_at	UBD Chr:6p21.3
6	12	201631_s_at	IER3 Chr:6p21.3
7	55	206420_at	IGSF6 Chr:16p12-p13
8	62	208944_at	TGFBR2 Chr:3p22
9	53	205997_at	ADAM28 Chr:8p21.2
10	49	205681_at	BCL2A1 Chr:15q24.3
11	37	204416_x_at	APOC1 Chr:19q13.2
12	42	204670_x_at	HLA-DRB3 Chr:6p21.3
13	1	1552316_a_at	IMAP1 Chr:7q36.1
14	2	1552365_at	SCIN Chr:7p21.3
15	4	1552386_at	FLJ33641 Chr:5q12.1
16	10	201422_at	IFI30 Chr:19p13.1
17	23	203104_at	CSF1R Chr:5q33-q35
18	25	203305_at	F13A1 Chr:6p25.3-p24.3
19	26	203416_at	CD53 Chr:1p13
20	38	204430_s_at	SLC2A5 Chr:1p36.2
21	41	204563_at	SELL Chr:1q23-q25
22	46	204971_at	CSTA Chr:3q21
23	48	205119_s_at	FPR1 Chr:19q13.4
24	57	207655_s_at	BLNK Chr:10q23.2-q23.33
25	3	1552367_a_at	SCIN Chr:7p21.3
26	11	201487_at	CTSC Chr:11q14.1-q14.3
27	13	201721_s_at	LAPTM5 Chr:1p34
28	15	202546_at	VAMP8 Chr:2p12-p11.2
29	16	202803_s_at	ITGB2 Chr:21q22.3
30	17	202833_s_at	SERPINA1 Chr:14q32.1
31	18	202901_x_at	CTSS Chr:1q21
32	22	202957_at	HCLS1 Chr:3q13
33	28	203561_at	FCGR2A Chr:1q23
34	29	203645_s_at	CD163 Chr:12p13.3
35	30	203665_at	HMOX1 Chr:22q13.1
36	31	204006_s_at	FCGR3A Chr:1q23
37	32	204007_at	FCGR3A Chr:1q23
38	35	204174_at	ALOX5AP Chr:13q12
39	43	204787_at	Z39IG Chr:xq12-q13.3
40	45	204959_at	MNDA Chr:1q22
41	47	205027_s_at	MAP3K8 Chr:10p12.1
42	50	205786_s_at	ITGAM Chr:16p11.2
43	52	205898_at	CX3CR1 Chr:3p21.3
44	54	206111_at	RNASE2 Chr:14q24-q31
45	56	206584_at	LY96 Chr:8q13.3
46	60	208306_x_at	HLA-DRB3 Chr:6p21.3
47	33	204122_at	TYROBP Chr:19q13.1
48	61	208894_at	HLA-DRA Chr:6p21.3
49	63	209312_x_at	HLA-DRB1 Chr:6p21.3
50	64	209619_at	CD74 Chr:5q32
51	68	210982_s_at	HLA-DRA Chr:6p21.3
52	6	1554899_s_at	FCER1G Chr:1q23
53	7	1555349_a_at	ITGB2 Chr:21q22.3
54	8	1555728_a_at	MS4A4A Chr:11q12
55	27	203535_at	S100A9 Chr:1q21
56	36	204232_at	FCER1G Chr:1q23
57	44	204834_at	FGL2 Chr:7q11.23
58	34	204150_at	STAB1 Chr:3p21.31
59	66	210176_at	TLR1 Chr:4p14
60	93	218854_at	SART2 Chr:6q22
61	5	1552807_a_at	SIGLEC10 Chr:19q13.3
62	40	204446_s_at	ALOX5 Chr:10q11.2
63	59	208146_s_at	CPVL Chr:7p15-p14
64	69	211429_s_at	--- ---
65	99	220146_at	TLR7 Chr:xp22.3
66	113	225646_at	CTSC Chr:11q14.1-q14.3
67	84	215049_x_at	CD163 Chr:12p13.3
68	87	216950_s_at	FCGR1A Chr:1q21.2-q21.3
69	21	202953_at	C1QB Chr:1p36.3-p34.1
70	88	217388_s_at	KYNU Chr:2q22.3
71	124	229937_x_at	LILRB1 Chr:19q13.4
72	58	208018_s_at	HCK Chr:20q11-q12
73	103	221210_s_at	NPL Chr:1q25
74	116	227265_at	--- ---
75	120	228532_at	MGC24133 Chr:1p13.2
76	121	229074_at	EHD4 Chr:15q11.1
77	82	214511_x_at	FCGR1A Chr:1q21.2-q21.3
78	134	38487_at	STAB1 Chr:3p21.31
79	76	212588_at	PTPRC Chr:1q31-q32
80	77	212671_s_at	HLA-DQA1 Chr:6p21.3
81	19	202902_s_at	CTSS Chr:1q21
82	83	214770_at	MSR1 Chr:8p22
83	85	215193_x_at	HLA-DRB3 Chr:6p21.3
84	86	216233_at	CD163 Chr:12p13.3
85	89	217478_s_at	HLA-DMA Chr:6p21.3
86	90	217767_at	C3 Chr:19p13.3-p13.2
87	91	217983_s_at	RNASET2 Chr:6q27
88	14	201743_at	CD14 Chr:5q31.1
89	92	218232_at	C1QA Chr:1p36.3-p34.1
90	95	219607_s_at	MS4A4A Chr:11q12
91	96	219666_at	MS4A6A Chr:11q12.1
92	97	219890_at	CLECSF5 Chr:7q33
93	101	220491_at	HAMP Chr:19q13.1
94	102	220532_s_at	LR8 Chr:7q36.1
95	106	223280_x_at	MS4A6A Chr:11q12.1
96	107	223343_at	MS4A7 Chr:11q12
97	110	224356_x_at	MS4A6A Chr:11q12.1
98	111	225353_s_at	C1QG Chr:1p36.11
99	114	225647_s_at	CTSC Chr:11q14.1-q14.3
100	115	226068_at	SYK Chr:9q22
101	117	227266_s_at	FYB Chr:5p13.1
102	118	227346_at	ZNFN1A1 Chr:7p13-p11.1
103	125	230252_at	GPR92 Chr:12p13.31
104	126	230391_at	--- ---
105	127	230550_at	MS4A6A Chr:11q12.1
106	128	230925_at	APBB1IP Chr:10p12.2
107	9	201137_s_at	HLA-DPB1 Chr:6p21.3
108	129	232617_at	CTSS Chr:1q21
109	131	234987_at	--- Chr:20q11.23
110	133	244434_at	--- ---
111	74	211991_s_at	HLA-DPA1 Chr:6p21.3
112	100	220330_s_at	SAMSN1 Chr:21q11
113	112	225502_at	DOCK8 Chr:9p24.3
114	122	229560_at	TLR8 Chr:xp22
115	80	213566_at	RNASE6 Chr:14q11.2
116	81	214467_at	GPR65 Chr:14q31-q32.1
117	72	211742_s_at	EVI2B Chr:17q11.2
118	75	212543_at	AIM1 Chr:6q21
119	130	232843_s_at	DOCK8 Chr:9p24.3
120	105	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
121	94	219386_s_at	SLAMF8 Chr:1q23.1
122	73	211990_at	HLA-DPA1 Chr:6p21.3
123	119	227889_at	CAPNS2 Chr:16q13
124	67	210314_x_at	TNFSF13 Chr:17p13.1
125	98	220005_at	GPR86 Chr:3q24
126	109	223660_at	AD026 Chr:1p13.2
127	123	229723_at	TAGAP Chr:6q25.3
128	70	211654_x_at	HLA-DQB1 Chr:6p21.3
129	104	221491_x_at	HLA-DRB3 Chr:6p21.3
130	108	223620_at	GPR34 Chr:xp11.4-p11.3
131	79	213537_at	HLA-DPA1 Chr:6p21.3
132	78	212998_x_at	HLA-DQB1 Chr:6p21.3
133	71	211656_x_at	HLA-DQB1 Chr:6p21.3
134	132	236028_at	IBSP Chr:4q21-q25

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	42
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:13:16

G24_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=42)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC