G24_using_S2

Super-paramagnetic Clustering of 134 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=35)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	25		203305_at	F13A1 Chr:6p25.3-p24.3
2	20		202917_s_at	S100A8 Chr:1q21
3	51		205890_s_at	UBD Chr:6p21.3
4	27		203535_at	S100A9 Chr:1q21
5	131		234987_at	--- Chr:20q11.23
6	41		204563_at	SELL Chr:1q23-q25
7	29		203645_s_at	CD163 Chr:12p13.3
8	10		201422_at	IFI30 Chr:19p13.1
9	59		208146_s_at	CPVL Chr:7p15-p14
10	35		204174_at	ALOX5AP Chr:13q12
11	49		205681_at	BCL2A1 Chr:15q24.3
12	11		201487_at	CTSC Chr:11q14.1-q14.3
13	53		205997_at	ADAM28 Chr:8p21.2
14	67		210314_x_at	TNFSF13 Chr:17p13.1
15	39		204438_at	MRC1 Chr:10p13
16	47		205027_s_at	MAP3K8 Chr:10p12.1
17	1		1552316_a_at	IMAP1 Chr:7q36.1
18	62		208944_at	TGFBR2 Chr:3p22
19	65		209823_x_at	HLA-DQB1 Chr:6p21.3
20	2		1552365_at	SCIN Chr:7p21.3
21	55		206420_at	IGSF6 Chr:16p12-p13
22	66		210176_at	TLR1 Chr:4p14
23	8		1555728_a_at	MS4A4A Chr:11q12
24	9		201137_s_at	HLA-DPB1 Chr:6p21.3
25	12		201631_s_at	IER3 Chr:6p21.3
26	17		202833_s_at	SERPINA1 Chr:14q32.1
27	18		202901_x_at	CTSS Chr:1q21
28	23		203104_at	CSF1R Chr:5q33-q35
29	4		1552386_at	FLJ33641 Chr:5q12.1
30	125		230252_at	GPR92 Chr:12p13.31
31	24		203290_at	HLA-DQA1 Chr:6p21.3
32	28		203561_at	FCGR2A Chr:1q23
33	31		204006_s_at	FCGR3A Chr:1q23
34	5		1552807_a_at	SIGLEC10 Chr:19q13.3
35	32		204007_at	FCGR3A Chr:1q23
36	26		203416_at	CD53 Chr:1p13
37	33		204122_at	TYROBP Chr:19q13.1
38	130		232843_s_at	DOCK8 Chr:9p24.3
39	16		202803_s_at	ITGB2 Chr:21q22.3
40	40		204446_s_at	ALOX5 Chr:10q11.2
41	118		227346_at	ZNFN1A1 Chr:7p13-p11.1
42	42		204670_x_at	HLA-DRB3 Chr:6p21.3
43	43		204787_at	Z39IG Chr:xq12-q13.3
44	44		204834_at	FGL2 Chr:7q11.23
45	48		205119_s_at	FPR1 Chr:19q13.4
46	52		205898_at	CX3CR1 Chr:3p21.3
47	57		207655_s_at	BLNK Chr:10q23.2-q23.33
48	61		208894_at	HLA-DRA Chr:6p21.3
49	63		209312_x_at	HLA-DRB1 Chr:6p21.3
50	69		211429_s_at	--- ---
51	72		211742_s_at	EVI2B Chr:17q11.2
52	34		204150_at	STAB1 Chr:3p21.31
53	6		1554899_s_at	FCER1G Chr:1q23
54	36		204232_at	FCER1G Chr:1q23
55	60		208306_x_at	HLA-DRB3 Chr:6p21.3
56	54		206111_at	RNASE2 Chr:14q24-q31
57	68		210982_s_at	HLA-DRA Chr:6p21.3
58	73		211990_at	HLA-DPA1 Chr:6p21.3
59	79		213537_at	HLA-DPA1 Chr:6p21.3
60	85		215193_x_at	HLA-DRB3 Chr:6p21.3
61	93		218854_at	SART2 Chr:6q22
62	92		218232_at	C1QA Chr:1p36.3-p34.1
63	111		225353_s_at	C1QG Chr:1p36.11
64	19		202902_s_at	CTSS Chr:1q21
65	114		225647_s_at	CTSC Chr:11q14.1-q14.3
66	74		211991_s_at	HLA-DPA1 Chr:6p21.3
67	75		212543_at	AIM1 Chr:6q21
68	7	G369	1555349_a_at	ITGB2 Chr:21q22.3
69	15	G369	202546_at	VAMP8 Chr:2p12-p11.2
70	22	G369	202957_at	HCLS1 Chr:3q13
71	45	G369	204959_at	MNDA Chr:1q22
72	58	G369	208018_s_at	HCK Chr:20q11-q12
73	64	G369	209619_at	CD74 Chr:5q32
74	38	G369	204430_s_at	SLC2A5 Chr:1p36.2
75	76	G369	212588_at	PTPRC Chr:1q31-q32
76	50	G369	205786_s_at	ITGAM Chr:16p11.2
77	80	G369	213566_at	RNASE6 Chr:14q11.2
78	100	G369	220330_s_at	SAMSN1 Chr:21q11
79	106	G369	223280_x_at	MS4A6A Chr:11q12.1
80	108	G369	223620_at	GPR34 Chr:xp11.4-p11.3
81	101	G369	220491_at	HAMP Chr:19q13.1
82	107	G369	223343_at	MS4A7 Chr:11q12
83	110	G369	224356_x_at	MS4A6A Chr:11q12.1
84	13	G369	201721_s_at	LAPTM5 Chr:1p34
85	117	G369	227266_s_at	FYB Chr:5p13.1
86	120	G369	228532_at	MGC24133 Chr:1p13.2
87	81	G369	214467_at	GPR65 Chr:14q31-q32.1
88	89	G369	217478_s_at	HLA-DMA Chr:6p21.3
89	88		217388_s_at	KYNU Chr:2q22.3
90	90		217767_at	C3 Chr:19p13.3-p13.2
91	14		201743_at	CD14 Chr:5q31.1
92	91		217983_s_at	RNASET2 Chr:6q27
93	95		219607_s_at	MS4A4A Chr:11q12
94	99		220146_at	TLR7 Chr:xp22.3
95	103		221210_s_at	NPL Chr:1q25
96	104		221491_x_at	HLA-DRB3 Chr:6p21.3
97	105		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
98	115		226068_at	SYK Chr:9q22
99	116		227265_at	--- ---
100	21		202953_at	C1QB Chr:1p36.3-p34.1
101	112		225502_at	DOCK8 Chr:9p24.3
102	119		227889_at	CAPNS2 Chr:16q13
103	124		229937_x_at	LILRB1 Chr:19q13.4
104	122		229560_at	TLR8 Chr:xp22
105	123		229723_at	TAGAP Chr:6q25.3
106	126		230391_at	--- ---
107	127		230550_at	MS4A6A Chr:11q12.1
108	128		230925_at	APBB1IP Chr:10p12.2
109	129		232617_at	CTSS Chr:1q21
110	3		1552367_a_at	SCIN Chr:7p21.3
111	82		214511_x_at	FCGR1A Chr:1q21.2-q21.3
112	87		216950_s_at	FCGR1A Chr:1q21.2-q21.3
113	98		220005_at	GPR86 Chr:3q24
114	109		223660_at	AD026 Chr:1p13.2
115	77		212671_s_at	HLA-DQA1 Chr:6p21.3
116	102		220532_s_at	LR8 Chr:7q36.1
117	86		216233_at	CD163 Chr:12p13.3
118	46		204971_at	CSTA Chr:3q21
119	83		214770_at	MSR1 Chr:8p22
120	96		219666_at	MS4A6A Chr:11q12.1
121	56		206584_at	LY96 Chr:8q13.3
122	113		225646_at	CTSC Chr:11q14.1-q14.3
123	71		211656_x_at	HLA-DQB1 Chr:6p21.3
124	78		212998_x_at	HLA-DQB1 Chr:6p21.3
125	97		219890_at	CLECSF5 Chr:7q33
126	133		244434_at	--- ---
127	70		211654_x_at	HLA-DQB1 Chr:6p21.3
128	94		219386_s_at	SLAMF8 Chr:1q23.1
129	30		203665_at	HMOX1 Chr:22q13.1
130	134		38487_at	STAB1 Chr:3p21.31
131	84		215049_x_at	CD163 Chr:12p13.3
132	132		236028_at	IBSP Chr:4q21-q25
133	37		204416_x_at	APOC1 Chr:19q13.2
134	121		229074_at	EHD4 Chr:15q11.1

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	35
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:10:39

G24_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=35)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC