G24_using_S1

Super-paramagnetic Clustering of 134 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	27		203535_at	S100A9 Chr:1q21
2	20		202917_s_at	S100A8 Chr:1q21
3	49		205681_at	BCL2A1 Chr:15q24.3
4	52		205898_at	CX3CR1 Chr:3p21.3
5	57		207655_s_at	BLNK Chr:10q23.2-q23.33
6	98		220005_at	GPR86 Chr:3q24
7	119		227889_at	CAPNS2 Chr:16q13
8	25		203305_at	F13A1 Chr:6p25.3-p24.3
9	39		204438_at	MRC1 Chr:10p13
10	44		204834_at	FGL2 Chr:7q11.23
11	4		1552386_at	FLJ33641 Chr:5q12.1
12	116		227265_at	--- ---
13	3		1552367_a_at	SCIN Chr:7p21.3
14	2		1552365_at	SCIN Chr:7p21.3
15	79		213537_at	HLA-DPA1 Chr:6p21.3
16	73		211990_at	HLA-DPA1 Chr:6p21.3
17	5		1552807_a_at	SIGLEC10 Chr:19q13.3
18	69		211429_s_at	--- ---
19	17		202833_s_at	SERPINA1 Chr:14q32.1
20	54		206111_at	RNASE2 Chr:14q24-q31
21	93		218854_at	SART2 Chr:6q22
22	62		208944_at	TGFBR2 Chr:3p22
23	71	G368	211656_x_at	HLA-DQB1 Chr:6p21.3
24	65	G368	209823_x_at	HLA-DQB1 Chr:6p21.3
25	24	G368	203290_at	HLA-DQA1 Chr:6p21.3
26	70	G368	211654_x_at	HLA-DQB1 Chr:6p21.3
27	78	G368	212998_x_at	HLA-DQB1 Chr:6p21.3
28	89	G368	217478_s_at	HLA-DMA Chr:6p21.3
29	61	G368	208894_at	HLA-DRA Chr:6p21.3
30	68	G368	210982_s_at	HLA-DRA Chr:6p21.3
31	64	G368	209619_at	CD74 Chr:5q32
32	60	G368	208306_x_at	HLA-DRB3 Chr:6p21.3
33	63	G368	209312_x_at	HLA-DRB1 Chr:6p21.3
34	85	G368	215193_x_at	HLA-DRB3 Chr:6p21.3
35	77	G368	212671_s_at	HLA-DQA1 Chr:6p21.3
36	104	G368	221491_x_at	HLA-DRB3 Chr:6p21.3
37	42	G368	204670_x_at	HLA-DRB3 Chr:6p21.3
38	9	G368	201137_s_at	HLA-DPB1 Chr:6p21.3
39	74	G368	211991_s_at	HLA-DPA1 Chr:6p21.3
40	34	G368	204150_at	STAB1 Chr:3p21.31
41	134	G368	38487_at	STAB1 Chr:3p21.31
42	30	G368	203665_at	HMOX1 Chr:22q13.1
43	38	G368	204430_s_at	SLC2A5 Chr:1p36.2
44	91	G368	217983_s_at	RNASET2 Chr:6q27
45	8	G366 G368	1555728_a_at	MS4A4A Chr:11q12
46	95	G366 G368	219607_s_at	MS4A4A Chr:11q12
47	56	G366 G368	206584_at	LY96 Chr:8q13.3
48	106	G366 G368	223280_x_at	MS4A6A Chr:11q12.1
49	110	G366 G368	224356_x_at	MS4A6A Chr:11q12.1
50	31	G366 G368	204006_s_at	FCGR3A Chr:1q23
51	81	G366 G368	214467_at	GPR65 Chr:14q31-q32.1
52	32	G366 G368	204007_at	FCGR3A Chr:1q23
53	45	G366 G368	204959_at	MNDA Chr:1q22
54	96	G366 G368	219666_at	MS4A6A Chr:11q12.1
55	1	G366 G368	1552316_a_at	IMAP1 Chr:7q36.1
56	127	G366 G368	230550_at	MS4A6A Chr:11q12.1
57	131	G366 G368	234987_at	--- Chr:20q11.23
58	133	G366 G368	244434_at	--- ---
59	59	G366 G368	208146_s_at	CPVL Chr:7p15-p14
60	66	G366 G368	210176_at	TLR1 Chr:4p14
61	28	G366 G368	203561_at	FCGR2A Chr:1q23
62	75	G366 G368	212543_at	AIM1 Chr:6q21
63	12	G368	201631_s_at	IER3 Chr:6p21.3
64	14	G368	201743_at	CD14 Chr:5q31.1
65	43	G368	204787_at	Z39IG Chr:xq12-q13.3
66	23	G367 G368	203104_at	CSF1R Chr:5q33-q35
67	67	G367 G368	210314_x_at	TNFSF13 Chr:17p13.1
68	129	G367 G368	232617_at	CTSS Chr:1q21
69	18	G367 G368	202901_x_at	CTSS Chr:1q21
70	19	G367 G368	202902_s_at	CTSS Chr:1q21
71	13	G367 G368	201721_s_at	LAPTM5 Chr:1p34
72	7	G367 G368	1555349_a_at	ITGB2 Chr:21q22.3
73	16	G367 G368	202803_s_at	ITGB2 Chr:21q22.3
74	90	G367 G368	217767_at	C3 Chr:19p13.3-p13.2
75	22	G367 G368	202957_at	HCLS1 Chr:3q13
76	76	G367 G368	212588_at	PTPRC Chr:1q31-q32
77	26	G367 G368	203416_at	CD53 Chr:1p13
78	33	G367 G368	204122_at	TYROBP Chr:19q13.1
79	10	G367 G368	201422_at	IFI30 Chr:19p13.1
80	94	G367 G368	219386_s_at	SLAMF8 Chr:1q23.1
81	88	G367 G368	217388_s_at	KYNU Chr:2q22.3
82	15	G367 G368	202546_at	VAMP8 Chr:2p12-p11.2
83	36	G367 G368	204232_at	FCER1G Chr:1q23
84	6	G367 G368	1554899_s_at	FCER1G Chr:1q23
85	58	G367 G368	208018_s_at	HCK Chr:20q11-q12
86	21	G367 G368	202953_at	C1QB Chr:1p36.3-p34.1
87	92	G367 G368	218232_at	C1QA Chr:1p36.3-p34.1
88	111	G367 G368	225353_s_at	C1QG Chr:1p36.11
89	40	G367 G368	204446_s_at	ALOX5 Chr:10q11.2
90	83	G367 G368	214770_at	MSR1 Chr:8p22
91	35	G367 G368	204174_at	ALOX5AP Chr:13q12
92	102	G367 G368	220532_s_at	LR8 Chr:7q36.1
93	50	G367 G368	205786_s_at	ITGAM Chr:16p11.2
94	105	G367 G368	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
95	115	G367 G368	226068_at	SYK Chr:9q22
96	41	G367 G368	204563_at	SELL Chr:1q23-q25
97	121	G367 G368	229074_at	EHD4 Chr:15q11.1
98	80	G367 G368	213566_at	RNASE6 Chr:14q11.2
99	51	G368	205890_s_at	UBD Chr:6p21.3
100	46	G368	204971_at	CSTA Chr:3q21
101	97	G368	219890_at	CLECSF5 Chr:7q33
102	120	G368	228532_at	MGC24133 Chr:1p13.2
103	122	G368	229560_at	TLR8 Chr:xp22
104	55	G368	206420_at	IGSF6 Chr:16p12-p13
105	126	G368	230391_at	--- ---
106	99	G368	220146_at	TLR7 Chr:xp22.3
107	118	G368	227346_at	ZNFN1A1 Chr:7p13-p11.1
108	87	G368	216950_s_at	FCGR1A Chr:1q21.2-q21.3
109	82	G368	214511_x_at	FCGR1A Chr:1q21.2-q21.3
110	124	G368	229937_x_at	LILRB1 Chr:19q13.4
111	125	G368	230252_at	GPR92 Chr:12p13.31
112	130	G368	232843_s_at	DOCK8 Chr:9p24.3
113	112	G368	225502_at	DOCK8 Chr:9p24.3
114	123	G368	229723_at	TAGAP Chr:6q25.3
115	72	G368	211742_s_at	EVI2B Chr:17q11.2
116	53	G368	205997_at	ADAM28 Chr:8p21.2
117	108	G368	223620_at	GPR34 Chr:xp11.4-p11.3
118	37	G368	204416_x_at	APOC1 Chr:19q13.2
119	128	G368	230925_at	APBB1IP Chr:10p12.2
120	47		205027_s_at	MAP3K8 Chr:10p12.1
121	29		203645_s_at	CD163 Chr:12p13.3
122	84		215049_x_at	CD163 Chr:12p13.3
123	86		216233_at	CD163 Chr:12p13.3
124	132		236028_at	IBSP Chr:4q21-q25
125	117		227266_s_at	FYB Chr:5p13.1
126	107		223343_at	MS4A7 Chr:11q12
127	103		221210_s_at	NPL Chr:1q25
128	100		220330_s_at	SAMSN1 Chr:21q11
129	101		220491_at	HAMP Chr:19q13.1
130	48		205119_s_at	FPR1 Chr:19q13.4
131	109		223660_at	AD026 Chr:1p13.2
132	11		201487_at	CTSC Chr:11q14.1-q14.3
133	113		225646_at	CTSC Chr:11q14.1-q14.3
134	114		225647_s_at	CTSC Chr:11q14.1-q14.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:07:30

G24_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC