G23_using_S6

Super-paramagnetic Clustering of 110 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	97		238498_at	--- ---
2	10		202890_at	MAP7 Chr:6q23.2
3	6		1557943_at	CNP Chr:17q21
4	32		208912_s_at	CNP Chr:17q21
5	39		210944_s_at	CAPN3 Chr:15q15.1-q21.1
6	49		214475_x_at	CAPN3 Chr:15q15.1-q21.1
7	41		211890_x_at	CAPN3 Chr:15q15.1-q21.1
8	2		1553796_at	FLJ30594 Chr:2p25.3
9	3		1553797_a_at	FLJ30594 Chr:2p25.3
10	40	G361 G362 G363 G364 G365	211836_s_at	MOG Chr:6p22-p21.3
11	21	G361 G362 G363 G364 G365	204733_at	KLK6 Chr:19q13.3
12	4	G361 G362 G363 G364 G365	1555807_a_at	MOG Chr:6p22-p21.3
13	25	G361 G362 G363 G364 G365	205989_s_at	MOG Chr:6p22-p21.3
14	29	G361 G362 G363 G364 G365	207323_s_at	MBP Chr:18q23
15	30	G361 G362 G363 G364 G365	207659_s_at	MOBP Chr:3p21.33
16	55	G361 G362 G363 G364 G365	218469_at	GREM1 Chr:15q13-q15
17	107	G361 G362 G363 G364 G365	242765_at	MOBP Chr:3p21.33
18	50	G361 G362 G363 G364 G365	214650_x_at	MOG Chr:6p22-p21.3
19	103	G361 G362 G363 G364 G365	241717_at	LOC285281 Chr:3p21.33
20	71	G361 G362 G363 G364 G365	227006_at	PPP1R14A Chr:19q13.1
21	92	G361 G362 G363 G364 G365	235794_at	MOBP Chr:3p21.33
22	9	G361 G362 G363 G364 G365	1565809_x_at	--- Chr:1p36.33
23	59	G361 G362 G363 G364 G365	219750_at	FLJ11155 Chr:4q32.1
24	44	G361 G362 G363 G364 G365	212829_at	--- ---
25	54	G361 G362 G363 G364 G365	218094_s_at	C20orf35 Chr:20q13.12
26	64	G361 G362 G363 G364 G365	223699_at	CNDP1 Chr:18q22.3
27	61	G361 G362 G363 G364 G365	221868_at	KIAA1155 Chr:2p13.2
28	22	G361 G362 G363 G364 G365	204777_s_at	MAL Chr:2cen-q13
29	87	G361 G362 G363 G364 G365	232388_at	CNTNAP4 Chr:16q23.1
30	106	G361 G362 G363 G364 G365	242002_at	TCBA1 Chr:6q21
31	80	G361 G362 G363 G364 G365	229713_at	--- ---
32	96	G361 G362 G363 G364 G365	238008_at	MGC35308 Chr:6q27
33	33	G361 G362 G363 G364 G365	209072_at	MBP Chr:18q23
34	1	G361 G362 G363 G364 G365	1553765_a_at	KIAA1900 Chr:6q16.3
35	99	G361 G362 G363 G364 G365	239575_at	TMEM10 Chr:10q23-q24
36	56	G361 G362 G363 G364 G365	218651_s_at	FLJ11196 Chr:15q22.32
37	53	G361 G362 G363 G364 G365	217613_at	FLJ11155 Chr:4q32.1
38	14	G361 G362 G363 G364 G365	204378_at	BCAS1 Chr:20q13.2-q13.3
39	91	G362 G363 G364 G365	235476_at	TSBF1 Chr:3q26.1
40	37	G362 G363 G364 G365	210193_at	MOBP Chr:3p21.33
41	81	G362 G363 G364 G365	229781_at	--- ---
42	60	G362 G363 G364 G365	220026_at	CLCA4 Chr:1p31-p22
43	5	G362 G363 G364 G365	1557481_a_at	--- ---
44	28	G362 G363 G364 G365	207308_at	SLCO1A2 Chr:12p12
45	8	G362 G363 G364 G365	1562608_at	--- ---
46	76	G362 G363 G364 G365	228624_at	FLJ11155 Chr:4q32.1
47	38	G362 G363 G364 G365	210657_s_at	PNUTL2 Chr:17q22-q23
48	94	G362 G363 G364 G365	236565_s_at	FLJ11196 Chr:15q22.32
49	105	G362 G363 G364 G365	241873_at	UNC5C Chr:4q21-q23
50	90	G363 G364 G365	235342_at	SPOCK3 Chr:4q32.3
51	93	G363 G364 G365	236420_s_at	TMEM16D Chr:12q23.3
52	83	G363 G364 G365	230104_s_at	p25 Chr:5p15.3
53	86	G363 G364 G365	231911_at	KIAA1189 Chr:2q24.2
54	24	G364 G365	205814_at	GRM3 Chr:7q21.1-q21.2
55	100	G364 G365	240053_x_at	--- ---
56	104	G364 G365	241833_at	--- ---
57	7	G364 G365	1562473_at	--- ---
58	20	G364 G365	204681_s_at	RAPGEF5 Chr:7p15.3
59	23	G364 G365	205637_s_at	SH3GL3 Chr:15q24
60	62	G364 G365	222862_s_at	AK5 Chr:1p31
61	17	G364 G365	204547_at	RAB40B Chr:17q25.3
62	31	G364 G365	208358_s_at	UGT8 Chr:4q26
63	77	G364 G365	228891_at	LOC349236 Chr:9q22.2
64	51	G364 G365	214769_at	CLCN4 Chr:Xp22.3
65	35	G364 G365	209791_at	PADI2 Chr:1p35.2-p35.1
66	52	G365	215314_at	ANK3 Chr:10q21
67	26	G365	206385_s_at	ANK3 Chr:10q21
68	34	G365	209442_x_at	ANK3 Chr:10q21
69	13	G365	204073_s_at	C11orf9 Chr:11q12-q13.1
70	58	G365	219429_at	FA2H Chr:16q23
71	57	G365	219305_x_at	FBXO2 Chr:1p36.21
72	108	G365	244113_at	--- ---
73	110	G365	43511_s_at	--- ---
74	109	G365	41577_at	PPP1R16B Chr:20q12
75	43	G365	212750_at	PPP1R16B Chr:20q12
76	15	G365	204467_s_at	SNCA Chr:4q21
77	27	G365	206448_at	ZNF365 Chr:10q21.2
78	11	G365	203151_at	MAP1A Chr:15q13-qter
79	42	G365	212339_at	EPB41L1 Chr:20q11.2-q12
80	18	G365	204678_s_at	KCNK1 Chr:1q42-q43
81	19	G365	204679_at	KCNK1 Chr:1q42-q43
82	102	G365	240512_x_at	KCTD4 Chr:13q14.11
83	75	G365	228010_at	PPP2R2C Chr:4p16.1
84	98	G365	238600_at	MARLIN1 Chr:4p16.2
85	45	G365	213106_at	ATP8A1 Chr:4p14-p12
86	65	G365	224482_s_at	RAB11-FIP4 Chr:17q11.2
87	85	G365	231484_at	ATP8A1 Chr:4p14-p12
88	79	G365	229110_at	--- ---
89	78	G365	228973_at	FLJ37266 Chr:11q14.1
90	84	G365	230783_at	LOC283713 Chr:15q13.1
91	72	G365	227439_at	EB-1 Chr:12q23.1-q23.2
92	74	G365	227441_s_at	EB-1 Chr:12q23.1-q23.2
93	70	G365	226018_at	Ells1 Chr:7p15.1
94	73	G365	227440_at	EB-1 Chr:12q23.1-q23.2
95	88	G365	234261_at	--- ---
96	101	G365	240292_x_at	EB-1 Chr:12q23.1-q23.2
97	95	G365	236838_at	--- ---
98	82	G365	229958_at	--- Chr:8p23.3
99	36		210169_at	KIAA0420 Chr:16p13.3
100	63		223572_at	KIAA1173 Chr:3p21.33
101	48		213839_at	KIAA0500 Chr:14q32.2
102	47		213385_at	CHN2 Chr:7p15.3
103	89		235236_at	--- ---
104	69		225822_at	MGC17299 Chr:1p34.1
105	46		213371_at	LDB3 Chr:10q22.3-q23.2
106	68		225727_at	PLEKHH1 Chr:14q24.1
107	67		225726_s_at	PLEKHH1 Chr:14q24.1
108	16		204519_s_at	TM4SF11 Chr:16q13
109	12		203619_s_at	FAIM2 Chr:12q13
110	66		225325_at	FLJ20160 Chr:2q32.3

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 04:02:39

G23_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC