G23_using_S5

Super-paramagnetic Clustering of 110 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	32		208912_s_at	CNP Chr:17q21
2	6		1557943_at	CNP Chr:17q21
3	10		202890_at	MAP7 Chr:6q23.2
4	97		238498_at	--- ---
5	2		1553796_at	FLJ30594 Chr:2p25.3
6	3		1553797_a_at	FLJ30594 Chr:2p25.3
7	31		208358_s_at	UGT8 Chr:4q26
8	69		225822_at	MGC17299 Chr:1p34.1
9	46		213371_at	LDB3 Chr:10q22.3-q23.2
10	20	G359 G360	204681_s_at	RAPGEF5 Chr:7p15.3
11	104	G359 G360	241833_at	--- ---
12	62	G359 G360	222862_s_at	AK5 Chr:1p31
13	24	G359 G360	205814_at	GRM3 Chr:7q21.1-q21.2
14	7	G359 G360	1562473_at	--- ---
15	100	G359 G360	240053_x_at	--- ---
16	105	G359 G360	241873_at	UNC5C Chr:4q21-q23
17	40	G357 G358 G359 G360	211836_s_at	MOG Chr:6p22-p21.3
18	21	G357 G358 G359 G360	204733_at	KLK6 Chr:19q13.3
19	4	G357 G358 G359 G360	1555807_a_at	MOG Chr:6p22-p21.3
20	25	G357 G358 G359 G360	205989_s_at	MOG Chr:6p22-p21.3
21	29	G357 G358 G359 G360	207323_s_at	MBP Chr:18q23
22	30	G357 G358 G359 G360	207659_s_at	MOBP Chr:3p21.33
23	55	G357 G358 G359 G360	218469_at	GREM1 Chr:15q13-q15
24	107	G357 G358 G359 G360	242765_at	MOBP Chr:3p21.33
25	50	G357 G358 G359 G360	214650_x_at	MOG Chr:6p22-p21.3
26	103	G357 G358 G359 G360	241717_at	LOC285281 Chr:3p21.33
27	92	G357 G358 G359 G360	235794_at	MOBP Chr:3p21.33
28	9	G357 G358 G359 G360	1565809_x_at	--- Chr:1p36.33
29	59	G357 G358 G359 G360	219750_at	FLJ11155 Chr:4q32.1
30	44	G357 G358 G359 G360	212829_at	--- ---
31	22	G357 G358 G359 G360	204777_s_at	MAL Chr:2cen-q13
32	61	G357 G358 G359 G360	221868_at	KIAA1155 Chr:2p13.2
33	36	G357 G358 G359 G360	210169_at	KIAA0420 Chr:16p13.3
34	87	G357 G358 G359 G360	232388_at	CNTNAP4 Chr:16q23.1
35	80	G357 G358 G359 G360	229713_at	--- ---
36	106	G357 G358 G359 G360	242002_at	TCBA1 Chr:6q21
37	96	G357 G358 G359 G360	238008_at	MGC35308 Chr:6q27
38	1	G357 G358 G359 G360	1553765_a_at	KIAA1900 Chr:6q16.3
39	93	G357 G358 G359 G360	236420_s_at	TMEM16D Chr:12q23.3
40	99	G357 G358 G359 G360	239575_at	TMEM10 Chr:10q23-q24
41	8	G358 G359 G360	1562608_at	--- ---
42	76	G358 G359 G360	228624_at	FLJ11155 Chr:4q32.1
43	38	G358 G359 G360	210657_s_at	PNUTL2 Chr:17q22-q23
44	41	G358 G359 G360	211890_x_at	CAPN3 Chr:15q15.1-q21.1
45	71	G358 G359 G360	227006_at	PPP1R14A Chr:19q13.1
46	91	G358 G359 G360	235476_at	TSBF1 Chr:3q26.1
47	37	G358 G359 G360	210193_at	MOBP Chr:3p21.33
48	81	G358 G359 G360	229781_at	--- ---
49	5	G358 G359 G360	1557481_a_at	--- ---
50	28	G358 G359 G360	207308_at	SLCO1A2 Chr:12p12
51	53	G358 G359 G360	217613_at	FLJ11155 Chr:4q32.1
52	60	G358 G359 G360	220026_at	CLCA4 Chr:1p31-p22
53	64	G358 G359 G360	223699_at	CNDP1 Chr:18q22.3
54	33	G358 G359 G360	209072_at	MBP Chr:18q23
55	39	G359 G360	210944_s_at	CAPN3 Chr:15q15.1-q21.1
56	94	G359 G360	236565_s_at	FLJ11196 Chr:15q22.32
57	49	G359 G360	214475_x_at	CAPN3 Chr:15q15.1-q21.1
58	86	G359 G360	231911_at	KIAA1189 Chr:2q24.2
59	17	G359 G360	204547_at	RAB40B Chr:17q25.3
60	51	G359 G360	214769_at	CLCN4 Chr:Xp22.3
61	90	G359 G360	235342_at	SPOCK3 Chr:4q32.3
62	83	G359 G360	230104_s_at	p25 Chr:5p15.3
63	63	G359 G360	223572_at	KIAA1173 Chr:3p21.33
64	14	G359 G360	204378_at	BCAS1 Chr:20q13.2-q13.3
65	47	G359 G360	213385_at	CHN2 Chr:7p15.3
66	48	G359 G360	213839_at	KIAA0500 Chr:14q32.2
67	54	G359 G360	218094_s_at	C20orf35 Chr:20q13.12
68	35	G359 G360	209791_at	PADI2 Chr:1p35.2-p35.1
69	56	G360	218651_s_at	FLJ11196 Chr:15q22.32
70	23	G360	205637_s_at	SH3GL3 Chr:15q24
71	89	G360	235236_at	--- ---
72	70	G360	226018_at	Ells1 Chr:7p15.1
73	82	G360	229958_at	--- Chr:8p23.3
74	102	G360	240512_x_at	KCTD4 Chr:13q14.11
75	75	G360	228010_at	PPP2R2C Chr:4p16.1
76	98	G360	238600_at	MARLIN1 Chr:4p16.2
77	18	G360	204678_s_at	KCNK1 Chr:1q42-q43
78	19	G360	204679_at	KCNK1 Chr:1q42-q43
79	15	G360	204467_s_at	SNCA Chr:4q21
80	27	G360	206448_at	ZNF365 Chr:10q21.2
81	42	G360	212339_at	EPB41L1 Chr:20q11.2-q12
82	109	G360	41577_at	PPP1R16B Chr:20q12
83	43	G360	212750_at	PPP1R16B Chr:20q12
84	11	G360	203151_at	MAP1A Chr:15q13-qter
85	57	G360	219305_x_at	FBXO2 Chr:1p36.21
86	108	G360	244113_at	--- ---
87	110	G360	43511_s_at	--- ---
88	65	G360	224482_s_at	RAB11-FIP4 Chr:17q11.2
89	72	G360	227439_at	EB-1 Chr:12q23.1-q23.2
90	73	G360	227440_at	EB-1 Chr:12q23.1-q23.2
91	88	G360	234261_at	--- ---
92	74	G360	227441_s_at	EB-1 Chr:12q23.1-q23.2
93	101	G360	240292_x_at	EB-1 Chr:12q23.1-q23.2
94	45	G360	213106_at	ATP8A1 Chr:4p14-p12
95	85	G360	231484_at	ATP8A1 Chr:4p14-p12
96	95	G360	236838_at	--- ---
97	52	G360	215314_at	ANK3 Chr:10q21
98	26	G360	206385_s_at	ANK3 Chr:10q21
99	34	G360	209442_x_at	ANK3 Chr:10q21
100	79	G360	229110_at	--- ---
101	78	G360	228973_at	FLJ37266 Chr:11q14.1
102	84	G360	230783_at	LOC283713 Chr:15q13.1
103	13		204073_s_at	C11orf9 Chr:11q12-q13.1
104	58		219429_at	FA2H Chr:16q23
105	77		228891_at	LOC349236 Chr:9q22.2
106	68		225727_at	PLEKHH1 Chr:14q24.1
107	67		225726_s_at	PLEKHH1 Chr:14q24.1
108	16		204519_s_at	TM4SF11 Chr:16q13
109	12		203619_s_at	FAIM2 Chr:12q13
110	66		225325_at	FLJ20160 Chr:2q32.3

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:58:18

G23_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC