G23_using_S4

Super-paramagnetic Clustering of 110 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	6		1557943_at	CNP Chr:17q21
2	32		208912_s_at	CNP Chr:17q21
3	15		204467_s_at	SNCA Chr:4q21
4	19		204679_at	KCNK1 Chr:1q42-q43
5	18		204678_s_at	KCNK1 Chr:1q42-q43
6	27		206448_at	ZNF365 Chr:10q21.2
7	34		209442_x_at	ANK3 Chr:10q21
8	26		206385_s_at	ANK3 Chr:10q21
9	52		215314_at	ANK3 Chr:10q21
10	30	G353 G355 G356	207659_s_at	MOBP Chr:3p21.33
11	4	G353 G355 G356	1555807_a_at	MOG Chr:6p22-p21.3
12	40	G353 G355 G356	211836_s_at	MOG Chr:6p22-p21.3
13	53	G353 G355 G356	217613_at	FLJ11155 Chr:4q32.1
14	103	G353 G355 G356	241717_at	LOC285281 Chr:3p21.33
15	21	G353 G355 G356	204733_at	KLK6 Chr:19q13.3
16	8	G353 G355 G356	1562608_at	--- ---
17	41	G353 G355 G356	211890_x_at	CAPN3 Chr:15q15.1-q21.1
18	49	G353 G355 G356	214475_x_at	CAPN3 Chr:15q15.1-q21.1
19	25	G353 G355 G356	205989_s_at	MOG Chr:6p22-p21.3
20	37	G353 G355 G356	210193_at	MOBP Chr:3p21.33
21	39	G353 G355 G356	210944_s_at	CAPN3 Chr:15q15.1-q21.1
22	92	G353 G355 G356	235794_at	MOBP Chr:3p21.33
23	60	G353 G355 G356	220026_at	CLCA4 Chr:1p31-p22
24	29	G353 G355 G356	207323_s_at	MBP Chr:18q23
25	50	G353 G355 G356	214650_x_at	MOG Chr:6p22-p21.3
26	107	G353 G355 G356	242765_at	MOBP Chr:3p21.33
27	61	G353 G355 G356	221868_at	KIAA1155 Chr:2p13.2
28	36	G353 G355 G356	210169_at	KIAA0420 Chr:16p13.3
29	106	G353 G355 G356	242002_at	TCBA1 Chr:6q21
30	59	G353 G355 G356	219750_at	FLJ11155 Chr:4q32.1
31	9	G353 G355 G356	1565809_x_at	--- Chr:1p36.33
32	76	G353 G355 G356	228624_at	FLJ11155 Chr:4q32.1
33	22	G353 G355 G356	204777_s_at	MAL Chr:2cen-q13
34	5	G353 G355 G356	1557481_a_at	--- ---
35	86	G353 G355 G356	231911_at	KIAA1189 Chr:2q24.2
36	64	G353 G355 G356	223699_at	CNDP1 Chr:18q22.3
37	99	G353 G355 G356	239575_at	TMEM10 Chr:10q23-q24
38	87	G353 G355 G356	232388_at	CNTNAP4 Chr:16q23.1
39	1	G353 G355 G356	1553765_a_at	KIAA1900 Chr:6q16.3
40	33	G353 G355 G356	209072_at	MBP Chr:18q23
41	96	G353 G355 G356	238008_at	MGC35308 Chr:6q27
42	100	G353 G355 G356	240053_x_at	--- ---
43	63	G355 G356	223572_at	KIAA1173 Chr:3p21.33
44	90	G355 G356	235342_at	SPOCK3 Chr:4q32.3
45	93	G355 G356	236420_s_at	TMEM16D Chr:12q23.3
46	104	G355 G356	241833_at	--- ---
47	62	G355 G356	222862_s_at	AK5 Chr:1p31
48	17	G355 G356	204547_at	RAB40B Chr:17q25.3
49	7	G355 G356	1562473_at	--- ---
50	23	G355 G356	205637_s_at	SH3GL3 Chr:15q24
51	91	G355 G356	235476_at	TSBF1 Chr:3q26.1
52	38	G355 G356	210657_s_at	PNUTL2 Chr:17q22-q23
53	71	G355 G356	227006_at	PPP1R14A Chr:19q13.1
54	81	G355 G356	229781_at	--- ---
55	94	G355 G356	236565_s_at	FLJ11196 Chr:15q22.32
56	56	G355 G356	218651_s_at	FLJ11196 Chr:15q22.32
57	28	G355 G356	207308_at	SLCO1A2 Chr:12p12
58	44	G355 G356	212829_at	--- ---
59	80	G355 G356	229713_at	--- ---
60	105	G355 G356	241873_at	UNC5C Chr:4q21-q23
61	47	G355 G356	213385_at	CHN2 Chr:7p15.3
62	35	G355 G356	209791_at	PADI2 Chr:1p35.2-p35.1
63	77	G355 G356	228891_at	LOC349236 Chr:9q22.2
64	102	G355 G356	240512_x_at	KCTD4 Chr:13q14.11
65	48	G355 G356	213839_at	KIAA0500 Chr:14q32.2
66	51	G355 G356	214769_at	CLCN4 Chr:Xp22.3
67	55	G355 G356	218469_at	GREM1 Chr:15q13-q15
68	13	G356	204073_s_at	C11orf9 Chr:11q12-q13.1
69	58	G356	219429_at	FA2H Chr:16q23
70	14	G356	204378_at	BCAS1 Chr:20q13.2-q13.3
71	42		212339_at	EPB41L1 Chr:20q11.2-q12
72	57		219305_x_at	FBXO2 Chr:1p36.21
73	108		244113_at	--- ---
74	31		208358_s_at	UGT8 Chr:4q26
75	65		224482_s_at	RAB11-FIP4 Chr:17q11.2
76	2	G354	1553796_at	FLJ30594 Chr:2p25.3
77	3	G354	1553797_a_at	FLJ30594 Chr:2p25.3
78	11	G354	203151_at	MAP1A Chr:15q13-qter
79	43	G354	212750_at	PPP1R16B Chr:20q12
80	109	G354	41577_at	PPP1R16B Chr:20q12
81	45	G354	213106_at	ATP8A1 Chr:4p14-p12
82	70	G354	226018_at	Ells1 Chr:7p15.1
83	72	G354	227439_at	EB-1 Chr:12q23.1-q23.2
84	74	G354	227441_s_at	EB-1 Chr:12q23.1-q23.2
85	73	G354	227440_at	EB-1 Chr:12q23.1-q23.2
86	88	G354	234261_at	--- ---
87	101	G354	240292_x_at	EB-1 Chr:12q23.1-q23.2
88	95	G354	236838_at	--- ---
89	82	G354	229958_at	--- Chr:8p23.3
90	85	G354	231484_at	ATP8A1 Chr:4p14-p12
91	110	G354	43511_s_at	--- ---
92	83	G354	230104_s_at	p25 Chr:5p15.3
93	79		229110_at	--- ---
94	78		228973_at	FLJ37266 Chr:11q14.1
95	84		230783_at	LOC283713 Chr:15q13.1
96	89		235236_at	--- ---
97	75		228010_at	PPP2R2C Chr:4p16.1
98	98		238600_at	MARLIN1 Chr:4p16.2
99	54		218094_s_at	C20orf35 Chr:20q13.12
100	69		225822_at	MGC17299 Chr:1p34.1
101	46		213371_at	LDB3 Chr:10q22.3-q23.2
102	20		204681_s_at	RAPGEF5 Chr:7p15.3
103	24		205814_at	GRM3 Chr:7q21.1-q21.2
104	68		225727_at	PLEKHH1 Chr:14q24.1
105	67		225726_s_at	PLEKHH1 Chr:14q24.1
106	16		204519_s_at	TM4SF11 Chr:16q13
107	10		202890_at	MAP7 Chr:6q23.2
108	97		238498_at	--- ---
109	12		203619_s_at	FAIM2 Chr:12q13
110	66		225325_at	FLJ20160 Chr:2q32.3

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:54:25

G23_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC