G23_using_S3

Super-paramagnetic Clustering of 110 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=33)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	37		210193_at	MOBP Chr:3p21.33
2	47		213385_at	CHN2 Chr:7p15.3
3	95		236838_at	--- ---
4	34		209442_x_at	ANK3 Chr:10q21
5	43		212750_at	PPP1R16B Chr:20q12
6	26		206385_s_at	ANK3 Chr:10q21
7	108		244113_at	--- ---
8	20	G352	204681_s_at	RAPGEF5 Chr:7p15.3
9	52	G352	215314_at	ANK3 Chr:10q21
10	1	G352	1553765_a_at	KIAA1900 Chr:6q16.3
11	45	G352	213106_at	ATP8A1 Chr:4p14-p12
12	24	G352	205814_at	GRM3 Chr:7q21.1-q21.2
13	11	G352	203151_at	MAP1A Chr:15q13-qter
14	27	G352	206448_at	ZNF365 Chr:10q21.2
15	28	G352	207308_at	SLCO1A2 Chr:12p12
16	19	G352	204679_at	KCNK1 Chr:1q42-q43
17	23	G352	205637_s_at	SH3GL3 Chr:15q24
18	42	G352	212339_at	EPB41L1 Chr:20q11.2-q12
19	14	G352	204378_at	BCAS1 Chr:20q13.2-q13.3
20	53	G352	217613_at	FLJ11155 Chr:4q32.1
21	93	G352	236420_s_at	TMEM16D Chr:12q23.3
22	55	G352	218469_at	GREM1 Chr:15q13-q15
23	2	G351 G352	1553796_at	FLJ30594 Chr:2p25.3
24	18	G351 G352	204678_s_at	KCNK1 Chr:1q42-q43
25	3	G351 G352	1553797_a_at	FLJ30594 Chr:2p25.3
26	12	G351 G352	203619_s_at	FAIM2 Chr:12q13
27	17	G351 G352	204547_at	RAB40B Chr:17q25.3
28	36	G351 G352	210169_at	KIAA0420 Chr:16p13.3
29	48	G351 G352	213839_at	KIAA0500 Chr:14q32.2
30	21	G351 G352	204733_at	KLK6 Chr:19q13.3
31	25	G351 G352	205989_s_at	MOG Chr:6p22-p21.3
32	31	G351 G352	208358_s_at	UGT8 Chr:4q26
33	5	G351 G352	1557481_a_at	--- ---
34	6	G351 G352	1557943_at	CNP Chr:17q21
35	16	G351 G352	204519_s_at	TM4SF11 Chr:16q13
36	22	G351 G352	204777_s_at	MAL Chr:2cen-q13
37	32	G351 G352	208912_s_at	CNP Chr:17q21
38	38	G351 G352	210657_s_at	PNUTL2 Chr:17q22-q23
39	59	G351 G352	219750_at	FLJ11155 Chr:4q32.1
40	44	G351 G352	212829_at	--- ---
41	92	G351 G352	235794_at	MOBP Chr:3p21.33
42	40	G351 G352	211836_s_at	MOG Chr:6p22-p21.3
43	41	G351 G352	211890_x_at	CAPN3 Chr:15q15.1-q21.1
44	49	G351 G352	214475_x_at	CAPN3 Chr:15q15.1-q21.1
45	13	G351 G352	204073_s_at	C11orf9 Chr:11q12-q13.1
46	39	G351 G352	210944_s_at	CAPN3 Chr:15q15.1-q21.1
47	8	G351 G352	1562608_at	--- ---
48	29	G351 G352	207323_s_at	MBP Chr:18q23
49	46	G351 G352	213371_at	LDB3 Chr:10q22.3-q23.2
50	69	G351 G352	225822_at	MGC17299 Chr:1p34.1
51	107	G351 G352	242765_at	MOBP Chr:3p21.33
52	50	G351 G352	214650_x_at	MOG Chr:6p22-p21.3
53	35	G351 G352	209791_at	PADI2 Chr:1p35.2-p35.1
54	54	G351 G352	218094_s_at	C20orf35 Chr:20q13.12
55	10	G351 G352	202890_at	MAP7 Chr:6q23.2
56	30	G351 G352	207659_s_at	MOBP Chr:3p21.33
57	58	G351 G352	219429_at	FA2H Chr:16q23
58	67	G351 G352	225726_s_at	PLEKHH1 Chr:14q24.1
59	97	G351 G352	238498_at	--- ---
60	64	G351 G352	223699_at	CNDP1 Chr:18q22.3
61	4	G351 G352	1555807_a_at	MOG Chr:6p22-p21.3
62	33	G351 G352	209072_at	MBP Chr:18q23
63	68	G351 G352	225727_at	PLEKHH1 Chr:14q24.1
64	71	G351 G352	227006_at	PPP1R14A Chr:19q13.1
65	76	G351 G352	228624_at	FLJ11155 Chr:4q32.1
66	77	G351 G352	228891_at	LOC349236 Chr:9q22.2
67	72	G351 G352	227439_at	EB-1 Chr:12q23.1-q23.2
68	56	G351 G352	218651_s_at	FLJ11196 Chr:15q22.32
69	57	G351 G352	219305_x_at	FBXO2 Chr:1p36.21
70	60	G351 G352	220026_at	CLCA4 Chr:1p31-p22
71	62	G351 G352	222862_s_at	AK5 Chr:1p31
72	73	G351 G352	227440_at	EB-1 Chr:12q23.1-q23.2
73	81	G351 G352	229781_at	--- ---
74	82	G351 G352	229958_at	--- Chr:8p23.3
75	85	G351 G352	231484_at	ATP8A1 Chr:4p14-p12
76	9	G351 G352	1565809_x_at	--- Chr:1p36.33
77	86	G351 G352	231911_at	KIAA1189 Chr:2q24.2
78	94	G351 G352	236565_s_at	FLJ11196 Chr:15q22.32
79	96	G351 G352	238008_at	MGC35308 Chr:6q27
80	103	G351 G352	241717_at	LOC285281 Chr:3p21.33
81	110	G351 G352	43511_s_at	--- ---
82	61	G351 G352	221868_at	KIAA1155 Chr:2p13.2
83	63	G351 G352	223572_at	KIAA1173 Chr:3p21.33
84	80	G351 G352	229713_at	--- ---
85	89	G351 G352	235236_at	--- ---
86	91	G351 G352	235476_at	TSBF1 Chr:3q26.1
87	101	G351 G352	240292_x_at	EB-1 Chr:12q23.1-q23.2
88	65	G351 G352	224482_s_at	RAB11-FIP4 Chr:17q11.2
89	83	G351 G352	230104_s_at	p25 Chr:5p15.3
90	74	G351 G352	227441_s_at	EB-1 Chr:12q23.1-q23.2
91	87	G351 G352	232388_at	CNTNAP4 Chr:16q23.1
92	70	G352	226018_at	Ells1 Chr:7p15.1
93	78	G352	228973_at	FLJ37266 Chr:11q14.1
94	90	G352	235342_at	SPOCK3 Chr:4q32.3
95	88	G352	234261_at	--- ---
96	99	G352	239575_at	TMEM10 Chr:10q23-q24
97	7	G352	1562473_at	--- ---
98	109	G352	41577_at	PPP1R16B Chr:20q12
99	102		240512_x_at	KCTD4 Chr:13q14.11
100	105		241873_at	UNC5C Chr:4q21-q23
101	15		204467_s_at	SNCA Chr:4q21
102	66		225325_at	FLJ20160 Chr:2q32.3
103	75		228010_at	PPP2R2C Chr:4p16.1
104	51		214769_at	CLCN4 Chr:Xp22.3
105	98		238600_at	MARLIN1 Chr:4p16.2
106	79		229110_at	--- ---
107	84		230783_at	LOC283713 Chr:15q13.1
108	106		242002_at	TCBA1 Chr:6q21
109	100		240053_x_at	--- ---
110	104		241833_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	33
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:50:49

G23_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=33)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC