G23_using_S2

Super-paramagnetic Clustering of 110 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=23)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	28		207308_at	SLCO1A2 Chr:12p12
2	48		213839_at	KIAA0500 Chr:14q32.2
3	102		240512_x_at	KCTD4 Chr:13q14.11
4	51		214769_at	CLCN4 Chr:Xp22.3
5	61		221868_at	KIAA1155 Chr:2p13.2
6	18		204678_s_at	KCNK1 Chr:1q42-q43
7	31	G350	208358_s_at	UGT8 Chr:4q26
8	49	G350	214475_x_at	CAPN3 Chr:15q15.1-q21.1
9	17	G350	204547_at	RAB40B Chr:17q25.3
10	24	G350	205814_at	GRM3 Chr:7q21.1-q21.2
11	27	G350	206448_at	ZNF365 Chr:10q21.2
12	42	G350	212339_at	EPB41L1 Chr:20q11.2-q12
13	20	G350	204681_s_at	RAPGEF5 Chr:7p15.3
14	44	G350	212829_at	--- ---
15	5	G349 G350	1557481_a_at	--- ---
16	38	G349 G350	210657_s_at	PNUTL2 Chr:17q22-q23
17	54	G349 G350	218094_s_at	C20orf35 Chr:20q13.12
18	47	G349 G350	213385_at	CHN2 Chr:7p15.3
19	32	G349 G350	208912_s_at	CNP Chr:17q21
20	57	G349 G350	219305_x_at	FBXO2 Chr:1p36.21
21	41	G349 G350	211890_x_at	CAPN3 Chr:15q15.1-q21.1
22	50	G349 G350	214650_x_at	MOG Chr:6p22-p21.3
23	11	G349 G350	203151_at	MAP1A Chr:15q13-qter
24	14	G349 G350	204378_at	BCAS1 Chr:20q13.2-q13.3
25	16	G349 G350	204519_s_at	TM4SF11 Chr:16q13
26	21	G349 G350	204733_at	KLK6 Chr:19q13.3
27	1	G349 G350	1553765_a_at	KIAA1900 Chr:6q16.3
28	7	G349 G350	1562473_at	--- ---
29	8	G349 G350	1562608_at	--- ---
30	12	G349 G350	203619_s_at	FAIM2 Chr:12q13
31	22	G349 G350	204777_s_at	MAL Chr:2cen-q13
32	3	G349 G350	1553797_a_at	FLJ30594 Chr:2p25.3
33	26	G349 G350	206385_s_at	ANK3 Chr:10q21
34	33	G349 G350	209072_at	MBP Chr:18q23
35	34	G349 G350	209442_x_at	ANK3 Chr:10q21
36	36	G349 G350	210169_at	KIAA0420 Chr:16p13.3
37	45	G349 G350	213106_at	ATP8A1 Chr:4p14-p12
38	71	G349 G350	227006_at	PPP1R14A Chr:19q13.1
39	86	G349 G350	231911_at	KIAA1189 Chr:2q24.2
40	88	G349 G350	234261_at	--- ---
41	103	G349 G350	241717_at	LOC285281 Chr:3p21.33
42	52	G349 G350	215314_at	ANK3 Chr:10q21
43	53	G349 G350	217613_at	FLJ11155 Chr:4q32.1
44	6	G349 G350	1557943_at	CNP Chr:17q21
45	25	G349 G350	205989_s_at	MOG Chr:6p22-p21.3
46	58	G349 G350	219429_at	FA2H Chr:16q23
47	66	G349 G350	225325_at	FLJ20160 Chr:2q32.3
48	64	G349 G350	223699_at	CNDP1 Chr:18q22.3
49	4	G349 G350	1555807_a_at	MOG Chr:6p22-p21.3
50	67	G349 G350	225726_s_at	PLEKHH1 Chr:14q24.1
51	92	G349 G350	235794_at	MOBP Chr:3p21.33
52	95	G349 G350	236838_at	--- ---
53	96	G349 G350	238008_at	MGC35308 Chr:6q27
54	65	G349 G350	224482_s_at	RAB11-FIP4 Chr:17q11.2
55	2	G349 G350	1553796_at	FLJ30594 Chr:2p25.3
56	73	G349 G350	227440_at	EB-1 Chr:12q23.1-q23.2
57	74	G349 G350	227441_s_at	EB-1 Chr:12q23.1-q23.2
58	72	G349 G350	227439_at	EB-1 Chr:12q23.1-q23.2
59	75	G349 G350	228010_at	PPP2R2C Chr:4p16.1
60	106	G349 G350	242002_at	TCBA1 Chr:6q21
61	79	G349 G350	229110_at	--- ---
62	85	G349 G350	231484_at	ATP8A1 Chr:4p14-p12
63	15	G349 G350	204467_s_at	SNCA Chr:4q21
64	63	G349 G350	223572_at	KIAA1173 Chr:3p21.33
65	91	G349 G350	235476_at	TSBF1 Chr:3q26.1
66	104	G349 G350	241833_at	--- ---
67	9	G349 G350	1565809_x_at	--- Chr:1p36.33
68	97	G349 G350	238498_at	--- ---
69	30	G349 G350	207659_s_at	MOBP Chr:3p21.33
70	101	G349 G350	240292_x_at	EB-1 Chr:12q23.1-q23.2
71	100	G349 G350	240053_x_at	--- ---
72	76	G349 G350	228624_at	FLJ11155 Chr:4q32.1
73	93	G349 G350	236420_s_at	TMEM16D Chr:12q23.3
74	99	G349 G350	239575_at	TMEM10 Chr:10q23-q24
75	83	G349 G350	230104_s_at	p25 Chr:5p15.3
76	109	G349 G350	41577_at	PPP1R16B Chr:20q12
77	39	G349 G350	210944_s_at	CAPN3 Chr:15q15.1-q21.1
78	68	G349 G350	225727_at	PLEKHH1 Chr:14q24.1
79	43	G349 G350	212750_at	PPP1R16B Chr:20q12
80	108	G349 G350	244113_at	--- ---
81	40	G350	211836_s_at	MOG Chr:6p22-p21.3
82	107	G350	242765_at	MOBP Chr:3p21.33
83	29	G350	207323_s_at	MBP Chr:18q23
84	62	G350	222862_s_at	AK5 Chr:1p31
85	80	G350	229713_at	--- ---
86	90	G350	235342_at	SPOCK3 Chr:4q32.3
87	10	G350	202890_at	MAP7 Chr:6q23.2
88	55	G350	218469_at	GREM1 Chr:15q13-q15
89	78	G350	228973_at	FLJ37266 Chr:11q14.1
90	37	G350	210193_at	MOBP Chr:3p21.33
91	59	G350	219750_at	FLJ11155 Chr:4q32.1
92	56	G350	218651_s_at	FLJ11196 Chr:15q22.32
93	89	G350	235236_at	--- ---
94	98	G350	238600_at	MARLIN1 Chr:4p16.2
95	23	G350	205637_s_at	SH3GL3 Chr:15q24
96	87	G350	232388_at	CNTNAP4 Chr:16q23.1
97	94	G350	236565_s_at	FLJ11196 Chr:15q22.32
98	35	G350	209791_at	PADI2 Chr:1p35.2-p35.1
99	81	G350	229781_at	--- ---
100	19		204679_at	KCNK1 Chr:1q42-q43
101	77		228891_at	LOC349236 Chr:9q22.2
102	110		43511_s_at	--- ---
103	13		204073_s_at	C11orf9 Chr:11q12-q13.1
104	105		241873_at	UNC5C Chr:4q21-q23
105	69		225822_at	MGC17299 Chr:1p34.1
106	84		230783_at	LOC283713 Chr:15q13.1
107	46		213371_at	LDB3 Chr:10q22.3-q23.2
108	70		226018_at	Ells1 Chr:7p15.1
109	60		220026_at	CLCA4 Chr:1p31-p22
110	82		229958_at	--- Chr:8p23.3

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	23
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:48:04

G23_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=23)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC