G23_using_S1

Super-paramagnetic Clustering of 110 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	69		225822_at	MGC17299 Chr:1p34.1
2	46		213371_at	LDB3 Chr:10q22.3-q23.2
3	68		225727_at	PLEKHH1 Chr:14q24.1
4	67		225726_s_at	PLEKHH1 Chr:14q24.1
5	16		204519_s_at	TM4SF11 Chr:16q13
6	6		1557943_at	CNP Chr:17q21
7	32		208912_s_at	CNP Chr:17q21
8	2		1553796_at	FLJ30594 Chr:2p25.3
9	3		1553797_a_at	FLJ30594 Chr:2p25.3
10	31		208358_s_at	UGT8 Chr:4q26
11	97	G348	238498_at	--- ---
12	10	G348	202890_at	MAP7 Chr:6q23.2
13	19	G348	204679_at	KCNK1 Chr:1q42-q43
14	18	G348	204678_s_at	KCNK1 Chr:1q42-q43
15	110	G348	43511_s_at	--- ---
16	52	G348	215314_at	ANK3 Chr:10q21
17	26	G348	206385_s_at	ANK3 Chr:10q21
18	34	G348	209442_x_at	ANK3 Chr:10q21
19	40	G345 G346 G347 G348	211836_s_at	MOG Chr:6p22-p21.3
20	21	G345 G346 G347 G348	204733_at	KLK6 Chr:19q13.3
21	4	G345 G346 G347 G348	1555807_a_at	MOG Chr:6p22-p21.3
22	25	G345 G346 G347 G348	205989_s_at	MOG Chr:6p22-p21.3
23	29	G345 G346 G347 G348	207323_s_at	MBP Chr:18q23
24	30	G345 G346 G347 G348	207659_s_at	MOBP Chr:3p21.33
25	107	G345 G346 G347 G348	242765_at	MOBP Chr:3p21.33
26	55	G345 G346 G347 G348	218469_at	GREM1 Chr:15q13-q15
27	103	G345 G346 G347 G348	241717_at	LOC285281 Chr:3p21.33
28	50	G345 G346 G347 G348	214650_x_at	MOG Chr:6p22-p21.3
29	92	G345 G346 G347 G348	235794_at	MOBP Chr:3p21.33
30	9	G345 G346 G347 G348	1565809_x_at	--- Chr:1p36.33
31	59	G345 G346 G347 G348	219750_at	FLJ11155 Chr:4q32.1
32	64	G345 G346 G347 G348	223699_at	CNDP1 Chr:18q22.3
33	22	G345 G346 G347 G348	204777_s_at	MAL Chr:2cen-q13
34	54	G345 G346 G347 G348	218094_s_at	C20orf35 Chr:20q13.12
35	61	G345 G346 G347 G348	221868_at	KIAA1155 Chr:2p13.2
36	77	G345 G346 G347 G348	228891_at	LOC349236 Chr:9q22.2
37	106	G345 G346 G347 G348	242002_at	TCBA1 Chr:6q21
38	87	G345 G346 G347 G348	232388_at	CNTNAP4 Chr:16q23.1
39	33	G345 G346 G347 G348	209072_at	MBP Chr:18q23
40	1	G345 G346 G347 G348	1553765_a_at	KIAA1900 Chr:6q16.3
41	86	G345 G346 G347 G348	231911_at	KIAA1189 Chr:2q24.2
42	90	G345 G346 G347 G348	235342_at	SPOCK3 Chr:4q32.3
43	71	G345 G346 G347 G348	227006_at	PPP1R14A Chr:19q13.1
44	99	G345 G346 G347 G348	239575_at	TMEM10 Chr:10q23-q24
45	5	G345 G346 G347 G348	1557481_a_at	--- ---
46	81	G345 G346 G347 G348	229781_at	--- ---
47	8	G346 G347 G348	1562608_at	--- ---
48	76	G346 G347 G348	228624_at	FLJ11155 Chr:4q32.1
49	38	G346 G347 G348	210657_s_at	PNUTL2 Chr:17q22-q23
50	53	G346 G347 G348	217613_at	FLJ11155 Chr:4q32.1
51	37	G346 G347 G348	210193_at	MOBP Chr:3p21.33
52	91	G346 G347 G348	235476_at	TSBF1 Chr:3q26.1
53	28	G346 G347 G348	207308_at	SLCO1A2 Chr:12p12
54	60	G346 G347 G348	220026_at	CLCA4 Chr:1p31-p22
55	104	G346 G347 G348	241833_at	--- ---
56	17	G346 G347 G348	204547_at	RAB40B Chr:17q25.3
57	23	G346 G347 G348	205637_s_at	SH3GL3 Chr:15q24
58	7	G346 G347 G348	1562473_at	--- ---
59	62	G346 G347 G348	222862_s_at	AK5 Chr:1p31
60	100	G346 G347 G348	240053_x_at	--- ---
61	105	G346 G347 G348	241873_at	UNC5C Chr:4q21-q23
62	56	G346 G347 G348	218651_s_at	FLJ11196 Chr:15q22.32
63	51	G346 G347 G348	214769_at	CLCN4 Chr:Xp22.3
64	75	G347 G348	228010_at	PPP2R2C Chr:4p16.1
65	98	G347 G348	238600_at	MARLIN1 Chr:4p16.2
66	78	G347 G348	228973_at	FLJ37266 Chr:11q14.1
67	79	G347 G348	229110_at	--- ---
68	102	G347 G348	240512_x_at	KCTD4 Chr:13q14.11
69	15	G347 G348	204467_s_at	SNCA Chr:4q21
70	35	G347 G348	209791_at	PADI2 Chr:1p35.2-p35.1
71	44	G347 G348	212829_at	--- ---
72	80	G347 G348	229713_at	--- ---
73	94	G347 G348	236565_s_at	FLJ11196 Chr:15q22.32
74	84	G347 G348	230783_at	LOC283713 Chr:15q13.1
75	27	G348	206448_at	ZNF365 Chr:10q21.2
76	42	G348	212339_at	EPB41L1 Chr:20q11.2-q12
77	109	G348	41577_at	PPP1R16B Chr:20q12
78	43	G348	212750_at	PPP1R16B Chr:20q12
79	57	G348	219305_x_at	FBXO2 Chr:1p36.21
80	108	G348	244113_at	--- ---
81	65	G348	224482_s_at	RAB11-FIP4 Chr:17q11.2
82	93	G348	236420_s_at	TMEM16D Chr:12q23.3
83	20	G348	204681_s_at	RAPGEF5 Chr:7p15.3
84	24	G348	205814_at	GRM3 Chr:7q21.1-q21.2
85	101	G348	240292_x_at	EB-1 Chr:12q23.1-q23.2
86	72	G348	227439_at	EB-1 Chr:12q23.1-q23.2
87	73	G348	227440_at	EB-1 Chr:12q23.1-q23.2
88	74	G348	227441_s_at	EB-1 Chr:12q23.1-q23.2
89	88	G348	234261_at	--- ---
90	70	G348	226018_at	Ells1 Chr:7p15.1
91	95	G348	236838_at	--- ---
92	82	G348	229958_at	--- Chr:8p23.3
93	11	G348	203151_at	MAP1A Chr:15q13-qter
94	83	G348	230104_s_at	p25 Chr:5p15.3
95	96	G348	238008_at	MGC35308 Chr:6q27
96	39	G348	210944_s_at	CAPN3 Chr:15q15.1-q21.1
97	41	G348	211890_x_at	CAPN3 Chr:15q15.1-q21.1
98	49	G348	214475_x_at	CAPN3 Chr:15q15.1-q21.1
99	14		204378_at	BCAS1 Chr:20q13.2-q13.3
100	13		204073_s_at	C11orf9 Chr:11q12-q13.1
101	58		219429_at	FA2H Chr:16q23
102	36		210169_at	KIAA0420 Chr:16p13.3
103	47		213385_at	CHN2 Chr:7p15.3
104	48		213839_at	KIAA0500 Chr:14q32.2
105	89		235236_at	--- ---
106	63		223572_at	KIAA1173 Chr:3p21.33
107	45		213106_at	ATP8A1 Chr:4p14-p12
108	85		231484_at	ATP8A1 Chr:4p14-p12
109	12		203619_s_at	FAIM2 Chr:12q13
110	66		225325_at	FLJ20160 Chr:2q32.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:45:05

G23_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC