G22_using_S6

Super-paramagnetic Clustering of 34 points in a 74 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	28		232355_at		--- ---
2	34		242856_at		--- ---
3	32		237945_at		--- ---
4	16		210794_s_at		MEG3 Chr:14q32
5	10		206953_s_at		LPHN2 Chr:1p31.1
6	22		226211_at		MEG3 Chr:14q32
7	21		226210_s_at		MEG3 Chr:14q32
8	4		202410_x_at		IGF2 Chr:11p15.5
9	3		202409_at		--- ---
10	1	G344	1559282_at		--- ---
11	7	G344	203924_at		GSTA1 Chr:6p12.1
12	20	G344	215513_at		HYMAI Chr:6q24
13	15	G344	210002_at		GATA6 Chr:18q11.1-q11.2
14	5	G344	202965_s_at		CAPN6 Chr:xq23
15	8	G344	204548_at		STAR Chr:8p11.2
16	14	G344	209560_s_at		DLK1 Chr:14q32
17	26	G344	227911_at		FLJ10312 Chr:18p11.23
18	17	G344	212713_at		MFAP4 Chr:17p11.2
19	13	G344	209318_x_at		PLAGL1 Chr:6q24-q25
20	33	G344	239006_at		SLC26A7 Chr:8q23
21	9	G344	205498_at		GHR Chr:5p13-p12
22	11	G344	207002_s_at		PLAGL1 Chr:6q24-q25
23	12	G344	207943_x_at		PLAGL1 Chr:6q24-q25
24	27	G344	227947_at		C6orf56 Chr:6q24.1
25	24	G344	227297_at		ITGA9 Chr:3p21.3
26	6	G344	203477_at		COL15A1 Chr:9q21-q22
27	2		201925_s_at		DAF Chr:1q32
28	19		213943_at		TWIST1 Chr:7p21.2
29	31		236220_at		--- ---
30	18		212956_at		KIAA0882 Chr:4q31.1
31	30		234994_at		KIAA1913 Chr:6q23.1
32	29		233261_at		EBF Chr:5q34
33	25		227646_at		EBF Chr:5q34
34	23		226905_at		MGC45871 Chr:17p13

Samples Names

1	16			148.cel
2	19			1553.cel
3	4			1076.cel
4	25			1780.cel
5	2			104.cel
6	9			1317.cel
7	5			12.cel
8	3			106.cel
9	12			1430.cel
10	57			547.cel
11	62			574.cel
12	7			129.cel
13	34			269.cel
14	11			1399.cel
15	65			70.cel
16	17			1497R.cel
17	35			274.cel
18	21			157.cel
19	46			356bis.cel
20	26			1854R.cel
21	71			94bis.cel
22	69			90.cel
23	13			1437.cel
24	8			1308.cel
25	27			190.cel
26	36			283.cel
27	1			100R.cel
28	44			345.cel
29	18			15.cel
30	66			80.cel
31	40			300.cel
32	70			93.cel
33	32			246.cel
34	33			254.cel
35	30			236.cel
36	38			288.cel
37	50			428.cel
38	20			155R.cel
39	47			360.cel
40	60			566.cel
41	14			1453.cel
42	23			1621.cel
43	37			284.cel
44	42			328.cel
45	10			1360.cel
46	45			349.cel
47	24			1622R.cel
48	28			218.cel
49	51			444.cel
50	31			242.cel
51	48			390.cel
52	54			506.cel
53	55			527.cel
54	59			563.cel
55	22			159.cel
56	39			30.cel
57	74			ge205.cel
58	52			458.cel
59	58			558.cel
60	43			344.cel
61	53			461.cel
62	67			83.cel
63	15			147.cel
64	29			222.cel
65	6			1284.cel
66	49			396.cel
67	61			57.cel
68	72			97.cel
69	41			323.cel
70	64			65R.cel
71	68			84.cel
72	73			ge197.cel
73	56			528bis.cel
74	63			63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:41:08