G22_using_S5

Super-paramagnetic Clustering of 34 points in a 73 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=3)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    114 209560_s_atDLK1 Chr:14q32
    210 206953_s_atLPHN2 Chr:1p31.1
    328 232355_at--- ---
    416 210794_s_atMEG3 Chr:14q32
    532 237945_at--- ---
    634 242856_at--- ---
    722 226211_atMEG3 Chr:14q32
    821 226210_s_atMEG3 Chr:14q32
    97 203924_atGSTA1 Chr:6p12.1
    1033 239006_atSLC26A7 Chr:8q23
    1125 227646_atEBF Chr:5q34
    1229 233261_atEBF Chr:5q34
    1323 226905_atMGC45871 Chr:17p13
    1411 207002_s_atPLAGL1 Chr:6q24-q25
    1512 207943_x_atPLAGL1 Chr:6q24-q25
    1620 215513_atHYMAI Chr:6q24
    1713 209318_x_atPLAGL1 Chr:6q24-q25
    181 1559282_at--- ---
    1927 227947_atC6orf56 Chr:6q24.1
    203 202409_at--- ---
    214 202410_x_atIGF2 Chr:11p15.5
    226 203477_atCOL15A1 Chr:9q21-q22
    2318 212956_atKIAA0882 Chr:4q31.1
    248 204548_atSTAR Chr:8p11.2
    2524 227297_atITGA9 Chr:3p21.3
    262 201925_s_atDAF Chr:1q32
    275 202965_s_atCAPN6 Chr:xq23
    2815 210002_atGATA6 Chr:18q11.1-q11.2
    299 205498_atGHR Chr:5p13-p12
    3026 227911_atFLJ10312 Chr:18p11.23
    3130 234994_atKIAA1913 Chr:6q23.1
    3217 212713_atMFAP4 Chr:17p11.2
    3331 236220_at--- ---
    3419 213943_atTWIST1 Chr:7p21.2

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156470.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217094bis.cel
    226890.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306580.cel
    3140300.cel
    326993.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5773ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626683.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687197.cel
    6941323.cel
    706365R.cel
    716784.cel
    7272ge197.cel
    7356528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)3
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 03:39:14