G22_using_S4

Super-paramagnetic Clustering of 34 points in a 69 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=4)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    114 209560_s_atDLK1 Chr:14q32
    228 232355_at--- ---
    316 210794_s_atMEG3 Chr:14q32
    432 237945_at--- ---
    534 242856_at--- ---
    622 226211_atMEG3 Chr:14q32
    721 226210_s_atMEG3 Chr:14q32
    810 206953_s_atLPHN2 Chr:1p31.1
    97 203924_atGSTA1 Chr:6p12.1
    1033 239006_atSLC26A7 Chr:8q23
    1120 215513_atHYMAI Chr:6q24
    1211 207002_s_atPLAGL1 Chr:6q24-q25
    1312 207943_x_atPLAGL1 Chr:6q24-q25
    141 1559282_at--- ---
    1513 209318_x_atPLAGL1 Chr:6q24-q25
    1627 227947_atC6orf56 Chr:6q24.1
    1717 212713_atMFAP4 Chr:17p11.2
    189 205498_atGHR Chr:5p13-p12
    1926 227911_atFLJ10312 Chr:18p11.23
    2024 227297_atITGA9 Chr:3p21.3
    216 203477_atCOL15A1 Chr:9q21-q22
    223 202409_at--- ---
    234 202410_x_atIGF2 Chr:11p15.5
    2415 210002_atGATA6 Chr:18q11.1-q11.2
    2530 234994_atKIAA1913 Chr:6q23.1
    268 204548_atSTAR Chr:8p11.2
    2718 212956_atKIAA0882 Chr:4q31.1
    2831 236220_at--- ---
    2919 213943_atTWIST1 Chr:7p21.2
    302 201925_s_atDAF Chr:1q32
    3125 227646_atEBF Chr:5q34
    3229 233261_atEBF Chr:5q34
    3323 226905_atMGC45871 Chr:17p13
    345 202965_s_atCAPN6 Chr:xq23

    Samples Names

    12104.cel
    281317.cel
    3412.cel
    43106.cel
    5111430.cel
    653547.cel
    758574.cel
    86129.cel
    930269.cel
    10101399.cel
    116070.cel
    12151497R.cel
    1331274.cel
    1418157.cel
    1542356bis.cel
    16221854R.cel
    176694bis.cel
    186490.cel
    19121437.cel
    2071308.cel
    2123190.cel
    2232283.cel
    231100R.cel
    2440345.cel
    251615.cel
    266180.cel
    2736300.cel
    286593.cel
    2928246.cel
    3029254.cel
    3126236.cel
    3234288.cel
    3346428.cel
    3417155R.cel
    3543360.cel
    3656566.cel
    37131453.cel
    38201621.cel
    3933284.cel
    4038328.cel
    4191360.cel
    4241349.cel
    43211622R.cel
    4424218.cel
    4547444.cel
    4627242.cel
    4744390.cel
    4850506.cel
    4951527.cel
    5055563.cel
    5119159.cel
    523530.cel
    5369ge205.cel
    5448458.cel
    5554558.cel
    5639344.cel
    5749461.cel
    586283.cel
    5914147.cel
    6025222.cel
    6151284.cel
    6245396.cel
    635757.cel
    646797.cel
    6537323.cel
    665965R.cel
    676384.cel
    6868ge197.cel
    6952528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)4
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 03:37:31