G22_using_S2

Super-paramagnetic Clustering of 34 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=3)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	17	G343	212713_at		MFAP4 Chr:17p11.2
2	20	G343	215513_at		HYMAI Chr:6q24
3	11	G343	207002_s_at		PLAGL1 Chr:6q24-q25
4	12	G343	207943_x_at		PLAGL1 Chr:6q24-q25
5	23	G343	226905_at		MGC45871 Chr:17p13
6	27	G343	227947_at		C6orf56 Chr:6q24.1
7	14	G343	209560_s_at		DLK1 Chr:14q32
8	13	G343	209318_x_at		PLAGL1 Chr:6q24-q25
9	1	G343	1559282_at		--- ---
10	9	G343	205498_at		GHR Chr:5p13-p12
11	26	G343	227911_at		FLJ10312 Chr:18p11.23
12	18	G343	212956_at		KIAA0882 Chr:4q31.1
13	3	G343	202409_at		--- ---
14	19	G343	213943_at		TWIST1 Chr:7p21.2
15	24	G343	227297_at		ITGA9 Chr:3p21.3
16	33	G343	239006_at		SLC26A7 Chr:8q23
17	6	G343	203477_at		COL15A1 Chr:9q21-q22
18	4	G342	202410_x_at		IGF2 Chr:11p15.5
19	31	G342	236220_at		--- ---
20	7	G342	203924_at		GSTA1 Chr:6p12.1
21	16	G342	210794_s_at		MEG3 Chr:14q32
22	34	G342	242856_at		--- ---
23	5	G342	202965_s_at		CAPN6 Chr:xq23
24	25	G342	227646_at		EBF Chr:5q34
25	8	G342	204548_at		STAR Chr:8p11.2
26	29	G342	233261_at		EBF Chr:5q34
27	32	G342	237945_at		--- ---
28	28	G342	232355_at		--- ---
29	2	G342	201925_s_at		DAF Chr:1q32
30	10	G342	206953_s_at		LPHN2 Chr:1p31.1
31	22	G342	226211_at		MEG3 Chr:14q32
32	21	G342	226210_s_at		MEG3 Chr:14q32
33	30	G342	234994_at		KIAA1913 Chr:6q23.1
34	15	G342	210002_at		GATA6 Chr:18q11.1-q11.2

Samples Names

1	1			1357.cel
2	2			1795R.cel
3	3			1869RR.cel
4	4			55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:34:05