G22_using_S1

Super-paramagnetic Clustering of 34 points in a 84 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=6)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    128 232355_at--- ---
    210 206953_s_atLPHN2 Chr:1p31.1
    334 242856_at--- ---
    416 210794_s_atMEG3 Chr:14q32
    532 237945_at--- ---
    622 226211_atMEG3 Chr:14q32
    721 226210_s_atMEG3 Chr:14q32
    819 213943_atTWIST1 Chr:7p21.2
    929 233261_atEBF Chr:5q34
    1023 226905_atMGC45871 Chr:17p13
    1125 227646_atEBF Chr:5q34
    124 G341202410_x_atIGF2 Chr:11p15.5
    133 G341202409_at--- ---
    146 G341203477_atCOL15A1 Chr:9q21-q22
    1515 G341210002_atGATA6 Chr:18q11.1-q11.2
    1626 G341227911_atFLJ10312 Chr:18p11.23
    171 G3411559282_at--- ---
    187 G341203924_atGSTA1 Chr:6p12.1
    195 G341202965_s_atCAPN6 Chr:xq23
    208 G341204548_atSTAR Chr:8p11.2
    2114 G341209560_s_atDLK1 Chr:14q32
    229 G341205498_atGHR Chr:5p13-p12
    2312 G341207943_x_atPLAGL1 Chr:6q24-q25
    2411 G341207002_s_atPLAGL1 Chr:6q24-q25
    2513 G341209318_x_atPLAGL1 Chr:6q24-q25
    2627 G341227947_atC6orf56 Chr:6q24.1
    2720 G341215513_atHYMAI Chr:6q24
    2817 G341212713_atMFAP4 Chr:17p11.2
    2933 G341239006_atSLC26A7 Chr:8q23
    3024 227297_atITGA9 Chr:3p21.3
    3118 212956_atKIAA0882 Chr:4q31.1
    3230 234994_atKIAA1913 Chr:6q23.1
    332 201925_s_atDAF Chr:1q32
    3431 236220_at--- ---

    Samples Names

    125161.cel
    233211.cel
    3111357.cel
    4291795R.cel
    5311869RR.cel
    66655.cel
    718148.cel
    8211553.cel
    941076.cel
    10281780.cel
    112104.cel
    12101317.cel
    13512.cel
    143106.cel
    15141430.cel
    1665547.cel
    1771574.cel
    187129.cel
    1941269.cel
    20131399.cel
    217570.cel
    22191497R.cel
    2342274.cel
    2423157.cel
    2553356bis.cel
    26301854R.cel
    278194bis.cel
    287990.cel
    29151437.cel
    3091308.cel
    3132190.cel
    3243283.cel
    331100R.cel
    3451345.cel
    352015.cel
    367680.cel
    3747300.cel
    388093.cel
    3939246.cel
    4040254.cel
    4137236.cel
    4245288.cel
    4357428.cel
    4422155R.cel
    4554360.cel
    4669566.cel
    47161453.cel
    48261621.cel
    4944284.cel
    5049328.cel
    51121360.cel
    5252349.cel
    53271622R.cel
    5435218.cel
    5558444.cel
    5638242.cel
    5755390.cel
    5861506.cel
    5962527.cel
    6068563.cel
    6124159.cel
    624630.cel
    6384ge205.cel
    6459458.cel
    6567558.cel
    6650344.cel
    6760461.cel
    687783.cel
    6917147.cel
    7036222.cel
    7161284.cel
    7256396.cel
    737057.cel
    748297.cel
    7548323.cel
    767465R.cel
    777884.cel
    7883ge197.cel
    7963528bis.cel
    807363.cel
    8181297.cel
    8264534.cel
    8334212R.cel
    847257R.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)6
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 03:31:58