G21_using_S6

Super-paramagnetic Clustering of 213 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1553422_s_at	A2BP1 Chr:16p13.3
2	114		221217_s_at	A2BP1 Chr:16p13.3
3	22		203798_s_at	VSNL1 Chr:2p24.3
4	21		203797_at	VSNL1 Chr:2p24.3
5	132		227226_at	C6orf117 Chr:6q15
6	116		221801_x_at	NEFL Chr:8p21
7	56		206084_at	PTPRR Chr:12q15
8	31		204339_s_at	RGS4 Chr:1q23.2
9	30		204337_at	RGS4 Chr:1q23.2
10	209		243681_at	SHANK2 Chr:11q13.2
11	81		213307_at	SHANK2 Chr:11q13.2
12	82		213308_at	SHANK2 Chr:11q13.2
13	157		230287_at	RUTBC2 Chr:22q11.23
14	17		202260_s_at	STXBP1 Chr:9q34.1
15	19		202712_s_at	CKMT1 Chr:15q15
16	23		203911_at	RAP1GA1 Chr:1p36.1-p35
17	119		223500_at	CPLX1 Chr:4p16.3
18	29		204260_at	CHGB Chr:20pter-p12
19	91		214157_at	GNAS Chr:20q13.2-q13.3
20	5		1555370_a_at	CAMTA1 Chr:1p36.23
21	79		213268_at	CAMTA1 Chr:1p36.23
22	150		229724_at	GABRB3 Chr:15q11.2-q12
23	139		227830_at	GABRB3 Chr:15q11.2-q12
24	136		227690_at	GABRB3 Chr:15q11.2-q12
25	207		243163_at	--- ---
26	34		204546_at	KIAA0513 Chr:16q24.1
27	138		227817_at	PRKCB1 Chr:16p11.2
28	184		236656_s_at	--- ---
29	186		237802_at	KIAA1889 Chr:8q11.23
30	160		230692_at	LOC157503 Chr:8q11.23
31	55		206051_at	ELAVL4 Chr:1p34
32	187		238073_at	ELAVL4 Chr:1p34
33	78		213172_at	TTC9 Chr:14q24.1
34	196		239678_at	--- ---
35	94		214607_at	PAK3 Chr:xq22.3-q23
36	146		229201_at	--- ---
37	83		213386_at	--- ---
38	117		223340_at	SPG3A Chr:14q22.1
39	64	G339 G340	206780_at	GAD2 Chr:10p11.23
40	165	G339 G340	231489_x_at	--- ---
41	46	G339 G340	205113_at	NEF3 Chr:8p21
42	28	G339 G340	204229_at	SLC17A7 Chr:19q13
43	131	G339 G340	227053_at	PACSIN1 Chr:6p21.3
44	26	G339 G340	204081_at	NRGN Chr:11q24
45	73	G339 G340	210247_at	SYN2 Chr:3p25
46	144	G339 G340	229039_at	SYN2 Chr:3p25
47	141	G339 G340	228262_at	FLJ14503 Chr:xp22.13
48	109	G339 G340	219659_at	ATP8A2 Chr:13q12-13
49	9	G339 G340	1556096_s_at	UNC13C Chr:15q21.1
50	1	G339 G340	1552714_at	CREG2 Chr:2q12.1
51	71	G339 G340	210040_at	SLC12A5 Chr:20q13.12
52	133	G339 G340	227240_at	NGEF Chr:2q37
53	65	G339 G340	209556_at	NCDN Chr:1p34.3
54	197	G339 G340	239765_at	--- ---
55	173	G339 G340	233139_at	--- ---
56	96	G339 G340	214811_at	KIAA0318 Chr:12q24.33
57	15	G339 G340	1568612_at	GABRG2 Chr:5q31.1-q33.1
58	123	G339 G340	224209_s_at	GDA Chr:9q21.11-21.33
59	126	G339 G340	225111_s_at	NAPB Chr:20p12.3-p11.21
60	25	G339 G340	203999_at	SYT1 Chr:12cen-q21
61	99	G339 G340	214956_at	--- ---
62	37	G339 G340	204697_s_at	CHGA Chr:14q32
63	100	G339 G340	215116_s_at	DNM1 Chr:9q34
64	212	G339 G340	244680_at	GLRB Chr:4q31.3
65	183	G339 G340	236456_at	PTPN5 Chr:11p15.1
66	51	G339 G340	205691_at	SYNGR3 Chr:16p13
67	128	G339 G340	226086_at	SYT13 Chr:11p12-p11
68	176	G339 G340	235066_at	MAP4 Chr:3p21
69	92	G339 G340	214230_at	CDC42 Chr:1p36.1
70	203	G339 G340	242193_at	--- Chr:8q12.3
71	87	G339 G340	214044_at	RYR2 Chr:1q42.1-q43
72	110	G339 G340	219671_at	HPCAL4 Chr:1p34.2
73	210	G339 G340	243929_at	--- ---
74	63	G338 G340	206678_at	GABRA1 Chr:5q34-q35
75	72	G338 G340	210227_at	DLGAP2 Chr:8p23
76	211	G338 G340	244118_at	GABRA1 Chr:5q34-q35
77	124	G338 G340	224650_at	MAL2 Chr:8q23
78	202	G338 G340	241807_x_at	--- ---
79	153	G338 G340	230137_at	FLJ30834 Chr:4q27
80	3	G338 G340	1553864_at	DKFZp761H2121 Chr:10q26.13
81	172	G338 G340	233002_at	KIAA1622 Chr:14q32.2
82	53	G338 G340	205827_at	CCK Chr:3p22-p21.3
83	112	G338 G340	220030_at	STYK1 Chr:12p13.31
84	11	G338 G340	1556366_s_at	FLJ33708 Chr:6p24.3
85	213	G338 G340	52837_at	KIAA1644 Chr:22q13
86	61	G338 G340	206456_at	GABRA5 Chr:15q11.2-q12
87	24	G338 G340	203998_s_at	SYT1 Chr:12cen-q21
88	50	G338 G340	205635_at	HAPIP Chr:3q21.2
89	111	G338 G340	219937_at	TRHDE Chr:12q15-q21
90	8	G338 G340	1556095_at	UNC13C Chr:15q21.1
91	171	G338 G340	232426_at	--- ---
92	10	G338 G340	1556351_at	HCN1 Chr:5p12
93	48	G338 G340	205414_s_at	KIAA0672 Chr:17p12
94	185	G338 G340	237384_x_at	--- ---
95	169	G338 G340	232305_at	HMGCLL1 Chr:6p12.1
96	200	G338 G340	241399_at	TAFA2 Chr:12q13.3-q14.1
97	194	G338 G340	239579_at	ABHD7 Chr:1p22.1
98	59	G338 G340	206376_at	SLC6A15 Chr:12q21.3
99	113	G338 G340	220359_s_at	ARPP-21 Chr:3p22.1
100	127	G338 G340	225792_at	--- ---
101	85	G338 G340	213921_at	SST Chr:3q28
102	108	G338 G340	219425_at	SULT4A1 Chr:22q13.2-q13.31
103	170	G338 G340	232411_at	--- ---
104	12	G338 G340	1557122_s_at	--- ---
105	204	G338 G340	242344_at	--- ---
106	137	G338 G340	227702_at	CYP4X1 Chr:1p33
107	201	G338 G340	241672_at	LOC400120 Chr:13q13.2
108	122	G340	224164_at	TPM3 Chr:1q21.2
109	161	G340	230698_at	--- ---
110	159	G340	230551_at	--- ---
111	18	G340	202507_s_at	SNAP25 Chr:20p12-p11.2
112	70	G340	210016_at	MYT1L Chr:2p25.3
113	149	G340	229300_at	--- ---
114	206	G340	242999_at	ARHGEF7 Chr:13q34
115	156	G340	230262_at	--- ---
116	74	G340	210721_s_at	PAK7 Chr:20p12
117	32	G340	204465_s_at	INA Chr:10q24.33
118	104	G340	218623_at	HMP19 Chr:5q35.2
119	57	G340	206196_s_at	RPIP8 Chr:17q21.31
120	97	G340	214874_at	PKP4 Chr:2q23-q31
121	191	G340	238966_at	BRUNOL4 Chr:18q12
122	120	G340	223529_at	SYT4 Chr:18q12.3
123	38	G340	204722_at	SCN3B Chr:11q24.1
124	39	G340	204723_at	SCN3B Chr:11q24.1
125	121	G340	223654_s_at	BRUNOL4 Chr:18q12
126	14	G340	1559545_at	--- ---
127	36	G340	204675_at	SRD5A1 Chr:5p15
128	154	G340	230238_at	LOC134548 Chr:5q31.1
129	47	G340	205257_s_at	AMPH Chr:7p14-p13
130	168	G340	231986_at	RIMS1 Chr:6q12-q13
131	76	G340	213040_s_at	NPTXR Chr:22q13.1
132	89	G340	214098_at	KIAA1107 Chr:1p22.1
133	98	G340	214945_at	NY-REN-7 Chr:5q35.3
134	152	G340	230076_at	FLJ10156 Chr:17p13.2
135	177	G340	235227_at	--- ---
136	54	G340	206013_s_at	ACTL6 Chr:7q22
137	208	G340	243666_at	BRUNOL4 Chr:18q12
138	175	G340	234303_s_at	GPR85 Chr:7q31
139	6	G340	1555958_at	CRTAC1 Chr:10q22
140	41	G340	204730_at	RIMS3 Chr:1pter-p22.2
141	52	G340	205818_at	DBC1 Chr:9q32-q33
142	101	G340	215241_at	TMEM16C Chr:11p14.3
143	77	G340	213122_at	TSPYL5 Chr:8q22.1
144	84	G340	213904_at	--- ---
145	86	G340	213938_at	CAST Chr:3p21.31
146	106	G340	219308_s_at	AK5 Chr:1p31
147	181	G340	236166_at	LOC285147 Chr:2p25.2
148	190	G340	238786_at	--- ---
149	80	G340	213280_at	GARNL4 Chr:17p13.3
150	166	G340	231771_at	GJB6 Chr:13q12
151	13	G340	1557961_s_at	--- ---
152	35	G340	204584_at	L1CAM Chr:xq28
153	107	G340	219368_at	NAP1L2 Chr:xq13
154	142	G340	228414_at	LOC142955 Chr:10q22.3
155	33		204513_s_at	ELMO1 Chr:7p14.1
156	45		204953_at	SNAP91 Chr:6q15
157	75		212473_s_at	MICAL2 Chr:11p15.3
158	20		203159_at	GLS Chr:2q32-q34
159	49		205551_at	SV2B Chr:15q26.1
160	151		229823_at	--- ---
161	188		238673_at	--- ---
162	178		235230_at	--- ---
163	40		204726_at	CDH13 Chr:16q24.2-q24.3
164	189		238727_at	--- ---
165	4		1554007_at	--- ---
166	7		1556047_s_at	KIAA1587 Chr:xq13.2
167	93		214376_at	--- ---
168	42		204743_at	NP25 Chr:3q13.13-q13.2
169	66		209583_s_at	MOX2 Chr:3q12-q13
170	67		209683_at	DKFZP566A1524 Chr:2p24.3
171	164		231325_at	UNC5D Chr:8p12-p11.23
172	162		230932_at	--- ---
173	195		239671_at	--- ---
174	60		206382_s_at	BDNF Chr:11p13
175	88		214046_at	--- ---
176	105		218720_x_at	PSK-1 Chr:16p12.1
177	90		214111_at	OPCML Chr:11q25
178	134		227365_at	ATCAY Chr:19p13.3
179	130		226864_at	PKIA Chr:8q21.11
180	118		223362_s_at	38233 Chr:22q13.2
181	158		230497_at	BRUNOL5 Chr:19p13
182	180		236024_at	GPM6A Chr:4q34
183	62		206552_s_at	TAC1 Chr:7q21-q22
184	103		216086_at	SV2C Chr:5q13.3
185	199		241382_at	--- ---
186	155		230255_at	GABRD Chr:1p36.3
187	192		239293_at	VMP Chr:6p22.1
188	115		221792_at	--- ---
189	163		231166_at	GPR155 Chr:2q31.1
190	16		202073_at	OPTN Chr:10p14
191	174		233499_at	KIAA1365 Chr:1p31.2
192	198		239767_at	--- ---
193	27		204134_at	PDE2A Chr:11q13.3
194	182		236448_at	UNC5A Chr:5q35.3
195	43		204763_s_at	GNAO1 Chr:16q13
196	135		227641_at	MGC33974 Chr:16p13.3
197	167		231935_at	ARPP-21 Chr:3p22.1
198	148		229294_at	JPH3 Chr:16q24.3
199	58		206290_s_at	RGS7 Chr:1q43
200	143		229029_at	--- ---
201	125		224801_at	NDFIP2 Chr:13q22.2
202	147		229254_at	DKFZp761N1114 Chr:1q32.1
203	193		239357_at	--- ---
204	145		229057_at	--- ---
205	95		214762_at	ATP6V1G2 Chr:6p21.3
206	179		235486_at	MGC34830 Chr:11p13
207	69		209982_s_at	NRXN2 Chr:11q13
208	44		204869_at	PCSK2 Chr:20p11.2
209	140		228194_s_at	SORCS1 Chr:10q23-q25
210	205		242404_at	--- ---
211	102		215307_at	--- ---
212	68		209726_at	CA11 Chr:19q13.3
213	129		226382_at	LOC283070 Chr:10p14

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:30:01

G21_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC