G21_using_S5

Super-paramagnetic Clustering of 213 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	5		1555370_a_at	CAMTA1 Chr:1p36.23
2	79		213268_at	CAMTA1 Chr:1p36.23
3	102		215307_at	--- ---
4	116		221801_x_at	NEFL Chr:8p21
5	56		206084_at	PTPRR Chr:12q15
6	2		1553422_s_at	A2BP1 Chr:16p13.3
7	114		221217_s_at	A2BP1 Chr:16p13.3
8	22		203798_s_at	VSNL1 Chr:2p24.3
9	21		203797_at	VSNL1 Chr:2p24.3
10	132		227226_at	C6orf117 Chr:6q15
11	31		204339_s_at	RGS4 Chr:1q23.2
12	30		204337_at	RGS4 Chr:1q23.2
13	209		243681_at	SHANK2 Chr:11q13.2
14	81		213307_at	SHANK2 Chr:11q13.2
15	82		213308_at	SHANK2 Chr:11q13.2
16	150		229724_at	GABRB3 Chr:15q11.2-q12
17	139		227830_at	GABRB3 Chr:15q11.2-q12
18	136		227690_at	GABRB3 Chr:15q11.2-q12
19	207		243163_at	--- ---
20	100		215116_s_at	DNM1 Chr:9q34
21	119		223500_at	CPLX1 Chr:4p16.3
22	186		237802_at	KIAA1889 Chr:8q11.23
23	160		230692_at	LOC157503 Chr:8q11.23
24	55		206051_at	ELAVL4 Chr:1p34
25	187		238073_at	ELAVL4 Chr:1p34
26	78		213172_at	TTC9 Chr:14q24.1
27	196		239678_at	--- ---
28	94	G336 G337	214607_at	PAK3 Chr:xq22.3-q23
29	146	G336 G337	229201_at	--- ---
30	87	G333 G334 G335 G336 G337	214044_at	RYR2 Chr:1q42.1-q43
31	64	G333 G334 G335 G336 G337	206780_at	GAD2 Chr:10p11.23
32	165	G333 G334 G335 G336 G337	231489_x_at	--- ---
33	68	G333 G334 G335 G336 G337	209726_at	CA11 Chr:19q13.3
34	98	G333 G334 G335 G336 G337	214945_at	NY-REN-7 Chr:5q35.3
35	46	G333 G334 G335 G336 G337	205113_at	NEF3 Chr:8p21
36	28	G333 G334 G335 G336 G337	204229_at	SLC17A7 Chr:19q13
37	131	G333 G334 G335 G336 G337	227053_at	PACSIN1 Chr:6p21.3
38	26	G333 G334 G335 G336 G337	204081_at	NRGN Chr:11q24
39	144	G333 G334 G335 G336 G337	229039_at	SYN2 Chr:3p25
40	73	G333 G334 G335 G336 G337	210247_at	SYN2 Chr:3p25
41	141	G333 G334 G335 G336 G337	228262_at	FLJ14503 Chr:xp22.13
42	48	G333 G334 G335 G336 G337	205414_s_at	KIAA0672 Chr:17p12
43	109	G333 G334 G335 G336 G337	219659_at	ATP8A2 Chr:13q12-13
44	20	G333 G334 G335 G336 G337	203159_at	GLS Chr:2q32-q34
45	9	G333 G334 G335 G336 G337	1556096_s_at	UNC13C Chr:15q21.1
46	1	G333 G334 G335 G336 G337	1552714_at	CREG2 Chr:2q12.1
47	71	G333 G334 G335 G336 G337	210040_at	SLC12A5 Chr:20q13.12
48	110	G333 G334 G335 G336 G337	219671_at	HPCAL4 Chr:1p34.2
49	65	G333 G334 G335 G336 G337	209556_at	NCDN Chr:1p34.3
50	197	G333 G334 G335 G336 G337	239765_at	--- ---
51	173	G333 G334 G335 G336 G337	233139_at	--- ---
52	96	G333 G334 G335 G336 G337	214811_at	KIAA0318 Chr:12q24.33
53	129	G333 G334 G335 G336 G337	226382_at	LOC283070 Chr:10p14
54	126	G333 G334 G335 G336 G337	225111_s_at	NAPB Chr:20p12.3-p11.21
55	25	G333 G334 G335 G336 G337	203999_at	SYT1 Chr:12cen-q21
56	99	G333 G334 G335 G336 G337	214956_at	--- ---
57	37	G333 G334 G335 G336 G337	204697_s_at	CHGA Chr:14q32
58	142	G333 G334 G335 G336 G337	228414_at	LOC142955 Chr:10q22.3
59	152	G333 G334 G335 G336 G337	230076_at	FLJ10156 Chr:17p13.2
60	14	G333 G334 G335 G336 G337	1559545_at	--- ---
61	210	G333 G334 G335 G336 G337	243929_at	--- ---
62	171	G333 G334 G335 G336 G337	232426_at	--- ---
63	212	G333 G334 G335 G336 G337	244680_at	GLRB Chr:4q31.3
64	63	G333 G334 G335 G336 G337	206678_at	GABRA1 Chr:5q34-q35
65	72	G333 G334 G335 G336 G337	210227_at	DLGAP2 Chr:8p23
66	211	G333 G334 G335 G336 G337	244118_at	GABRA1 Chr:5q34-q35
67	124	G333 G334 G335 G336 G337	224650_at	MAL2 Chr:8q23
68	202	G333 G334 G335 G336 G337	241807_x_at	--- ---
69	3	G333 G334 G335 G336 G337	1553864_at	DKFZp761H2121 Chr:10q26.13
70	153	G333 G334 G335 G336 G337	230137_at	FLJ30834 Chr:4q27
71	172	G333 G334 G335 G336 G337	233002_at	KIAA1622 Chr:14q32.2
72	12	G333 G334 G335 G336 G337	1557122_s_at	--- ---
73	53	G333 G334 G335 G336 G337	205827_at	CCK Chr:3p22-p21.3
74	112	G333 G334 G335 G336 G337	220030_at	STYK1 Chr:12p13.31
75	11	G333 G334 G335 G336 G337	1556366_s_at	FLJ33708 Chr:6p24.3
76	213	G333 G334 G335 G336 G337	52837_at	KIAA1644 Chr:22q13
77	61	G333 G334 G335 G336 G337	206456_at	GABRA5 Chr:15q11.2-q12
78	50	G333 G334 G335 G336 G337	205635_at	HAPIP Chr:3q21.2
79	24	G333 G334 G335 G336 G337	203998_s_at	SYT1 Chr:12cen-q21
80	111	G333 G334 G335 G336 G337	219937_at	TRHDE Chr:12q15-q21
81	10	G333 G334 G335 G336 G337	1556351_at	HCN1 Chr:5p12
82	8	G333 G334 G335 G336 G337	1556095_at	UNC13C Chr:15q21.1
83	185	G333 G334 G335 G336 G337	237384_x_at	--- ---
84	169	G333 G334 G335 G336 G337	232305_at	HMGCLL1 Chr:6p12.1
85	194	G333 G334 G335 G336 G337	239579_at	ABHD7 Chr:1p22.1
86	200	G333 G334 G335 G336 G337	241399_at	TAFA2 Chr:12q13.3-q14.1
87	59	G333 G334 G335 G336 G337	206376_at	SLC6A15 Chr:12q21.3
88	113	G333 G334 G335 G336 G337	220359_s_at	ARPP-21 Chr:3p22.1
89	127	G333 G334 G335 G336 G337	225792_at	--- ---
90	201	G333 G334 G335 G336 G337	241672_at	LOC400120 Chr:13q13.2
91	85	G333 G334 G335 G336 G337	213921_at	SST Chr:3q28
92	137	G333 G334 G335 G336 G337	227702_at	CYP4X1 Chr:1p33
93	204	G333 G334 G335 G336 G337	242344_at	--- ---
94	108	G333 G334 G335 G336 G337	219425_at	SULT4A1 Chr:22q13.2-q13.31
95	183	G333 G334 G335 G336 G337	236456_at	PTPN5 Chr:11p15.1
96	154	G333 G334 G335 G336 G337	230238_at	LOC134548 Chr:5q31.1
97	36	G333 G334 G335 G336 G337	204675_at	SRD5A1 Chr:5p15
98	51	G333 G334 G335 G336 G337	205691_at	SYNGR3 Chr:16p13
99	170	G333 G334 G335 G336 G337	232411_at	--- ---
100	133	G334 G335 G336 G337	227240_at	NGEF Chr:2q37
101	122	G334 G335 G336 G337	224164_at	TPM3 Chr:1q21.2
102	161	G334 G335 G336 G337	230698_at	--- ---
103	190	G334 G335 G336 G337	238786_at	--- ---
104	159	G334 G335 G336 G337	230551_at	--- ---
105	123	G334 G335 G336 G337	224209_s_at	GDA Chr:9q21.11-21.33
106	80	G334 G335 G336 G337	213280_at	GARNL4 Chr:17p13.3
107	107	G334 G335 G336 G337	219368_at	NAP1L2 Chr:xq13
108	176	G335 G336 G337	235066_at	MAP4 Chr:3p21
109	145	G335 G336 G337	229057_at	--- ---
110	203	G335 G336 G337	242193_at	--- Chr:8q12.3
111	49	G335 G336 G337	205551_at	SV2B Chr:15q26.1
112	128	G335 G336 G337	226086_at	SYT13 Chr:11p12-p11
113	19	G335 G336 G337	202712_s_at	CKMT1 Chr:15q15
114	27	G335 G336 G337	204134_at	PDE2A Chr:11q13.3
115	57	G335 G336 G337	206196_s_at	RPIP8 Chr:17q21.31
116	97	G335 G336 G337	214874_at	PKP4 Chr:2q23-q31
117	47	G335 G336 G337	205257_s_at	AMPH Chr:7p14-p13
118	149	G335 G336 G337	229300_at	--- ---
119	195	G335 G336 G337	239671_at	--- ---
120	15	G335 G336 G337	1568612_at	GABRG2 Chr:5q31.1-q33.1
121	38	G335 G336 G337	204722_at	SCN3B Chr:11q24.1
122	182	G335 G336 G337	236448_at	UNC5A Chr:5q35.3
123	191	G335 G336 G337	238966_at	BRUNOL4 Chr:18q12
124	39	G335 G336 G337	204723_at	SCN3B Chr:11q24.1
125	121	G335 G336 G337	223654_s_at	BRUNOL4 Chr:18q12
126	120	G335 G336 G337	223529_at	SYT4 Chr:18q12.3
127	156	G335 G336 G337	230262_at	--- ---
128	70	G335 G336 G337	210016_at	MYT1L Chr:2p25.3
129	17	G335 G336 G337	202260_s_at	STXBP1 Chr:9q34.1
130	92	G335 G336 G337	214230_at	CDC42 Chr:1p36.1
131	206	G335 G336 G337	242999_at	ARHGEF7 Chr:13q34
132	32	G335 G336 G337	204465_s_at	INA Chr:10q24.33
133	104	G335 G336 G337	218623_at	HMP19 Chr:5q35.2
134	6	G335 G336 G337	1555958_at	CRTAC1 Chr:10q22
135	151	G335 G336 G337	229823_at	--- ---
136	157	G335 G336 G337	230287_at	RUTBC2 Chr:22q11.23
137	89	G335 G336 G337	214098_at	KIAA1107 Chr:1p22.1
138	158	G335 G336 G337	230497_at	BRUNOL5 Chr:19p13
139	180	G335 G336 G337	236024_at	GPM6A Chr:4q34
140	18	G335 G336 G337	202507_s_at	SNAP25 Chr:20p12-p11.2
141	91	G335 G336 G337	214157_at	GNAS Chr:20q13.2-q13.3
142	168	G335 G336 G337	231986_at	RIMS1 Chr:6q12-q13
143	74	G335 G336 G337	210721_s_at	PAK7 Chr:20p12
144	86	G335 G336 G337	213938_at	CAST Chr:3p21.31
145	130	G335 G336 G337	226864_at	PKIA Chr:8q21.11
146	162	G335 G336 G337	230932_at	--- ---
147	208	G335 G336 G337	243666_at	BRUNOL4 Chr:18q12
148	90	G335 G336 G337	214111_at	OPCML Chr:11q25
149	178	G335 G336 G337	235230_at	--- ---
150	77	G335 G336 G337	213122_at	TSPYL5 Chr:8q22.1
151	177	G335 G336 G337	235227_at	--- ---
152	52	G335 G336 G337	205818_at	DBC1 Chr:9q32-q33
153	175	G335 G336 G337	234303_s_at	GPR85 Chr:7q31
154	83	G336 G337	213386_at	--- ---
155	117	G336 G337	223340_at	SPG3A Chr:14q22.1
156	45	G336 G337	204953_at	SNAP91 Chr:6q15
157	188	G336 G337	238673_at	--- ---
158	13	G336 G337	1557961_s_at	--- ---
159	54	G336 G337	206013_s_at	ACTL6 Chr:7q22
160	118	G336 G337	223362_s_at	38233 Chr:22q13.2
161	166	G336 G337	231771_at	GJB6 Chr:13q12
162	76	G336 G337	213040_s_at	NPTXR Chr:22q13.1
163	106	G336 G337	219308_s_at	AK5 Chr:1p31
164	181	G336 G337	236166_at	LOC285147 Chr:2p25.2
165	147	G336 G337	229254_at	DKFZp761N1114 Chr:1q32.1
166	58	G336 G337	206290_s_at	RGS7 Chr:1q43
167	143	G336 G337	229029_at	--- ---
168	193	G336 G337	239357_at	--- ---
169	29	G336 G337	204260_at	CHGB Chr:20pter-p12
170	84	G336 G337	213904_at	--- ---
171	4	G336 G337	1554007_at	--- ---
172	93	G336 G337	214376_at	--- ---
173	101	G336 G337	215241_at	TMEM16C Chr:11p14.3
174	40	G336 G337	204726_at	CDH13 Chr:16q24.2-q24.3
175	41	G336 G337	204730_at	RIMS3 Chr:1pter-p22.2
176	35	G336 G337	204584_at	L1CAM Chr:xq28
177	134	G336 G337	227365_at	ATCAY Chr:19p13.3
178	164	G336 G337	231325_at	UNC5D Chr:8p12-p11.23
179	103	G336 G337	216086_at	SV2C Chr:5q13.3
180	62	G336 G337	206552_s_at	TAC1 Chr:7q21-q22
181	199	G336 G337	241382_at	--- ---
182	155	G336 G337	230255_at	GABRD Chr:1p36.3
183	75	G336 G337	212473_s_at	MICAL2 Chr:11p15.3
184	33	G336 G337	204513_s_at	ELMO1 Chr:7p14.1
185	60	G336 G337	206382_s_at	BDNF Chr:11p13
186	34	G336 G337	204546_at	KIAA0513 Chr:16q24.1
187	138	G336 G337	227817_at	PRKCB1 Chr:16p11.2
188	23	G337	203911_at	RAP1GA1 Chr:1p36.1-p35
189	7	G337	1556047_s_at	KIAA1587 Chr:xq13.2
190	42	G337	204743_at	NP25 Chr:3q13.13-q13.2
191	66	G337	209583_s_at	MOX2 Chr:3q12-q13
192	184	G337	236656_s_at	--- ---
193	115	G337	221792_at	--- ---
194	192	G337	239293_at	VMP Chr:6p22.1
195	167	G337	231935_at	ARPP-21 Chr:3p22.1
196	16	G337	202073_at	OPTN Chr:10p14
197	174	G337	233499_at	KIAA1365 Chr:1p31.2
198	198	G337	239767_at	--- ---
199	189	G337	238727_at	--- ---
200	67		209683_at	DKFZP566A1524 Chr:2p24.3
201	88		214046_at	--- ---
202	43		204763_s_at	GNAO1 Chr:16q13
203	135		227641_at	MGC33974 Chr:16p13.3
204	105		218720_x_at	PSK-1 Chr:16p12.1
205	148		229294_at	JPH3 Chr:16q24.3
206	69		209982_s_at	NRXN2 Chr:11q13
207	44		204869_at	PCSK2 Chr:20p11.2
208	140		228194_s_at	SORCS1 Chr:10q23-q25
209	205		242404_at	--- ---
210	163		231166_at	GPR155 Chr:2q31.1
211	95		214762_at	ATP6V1G2 Chr:6p21.3
212	125		224801_at	NDFIP2 Chr:13q22.2
213	179		235486_at	MGC34830 Chr:11p13

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:24:48

G21_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC