G21_using_S4

Super-paramagnetic Clustering of 213 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	116		221801_x_at	NEFL Chr:8p21
2	56		206084_at	PTPRR Chr:12q15
3	2		1553422_s_at	A2BP1 Chr:16p13.3
4	114		221217_s_at	A2BP1 Chr:16p13.3
5	198		239767_at	--- ---
6	174		233499_at	KIAA1365 Chr:1p31.2
7	16		202073_at	OPTN Chr:10p14
8	31		204339_s_at	RGS4 Chr:1q23.2
9	30		204337_at	RGS4 Chr:1q23.2
10	81	G332	213307_at	SHANK2 Chr:11q13.2
11	209	G332	243681_at	SHANK2 Chr:11q13.2
12	82	G332	213308_at	SHANK2 Chr:11q13.2
13	100	G331 G332	215116_s_at	DNM1 Chr:9q34
14	119	G331 G332	223500_at	CPLX1 Chr:4p16.3
15	22	G331 G332	203798_s_at	VSNL1 Chr:2p24.3
16	21	G331 G332	203797_at	VSNL1 Chr:2p24.3
17	13	G330 G331 G332	1557961_s_at	--- ---
18	5	G330 G331 G332	1555370_a_at	CAMTA1 Chr:1p36.23
19	79	G330 G331 G332	213268_at	CAMTA1 Chr:1p36.23
20	102	G330 G331 G332	215307_at	--- ---
21	165	G326 G328 G329 G330 G331 G332	231489_x_at	--- ---
22	68	G326 G328 G329 G330 G331 G332	209726_at	CA11 Chr:19q13.3
23	87	G326 G328 G329 G330 G331 G332	214044_at	RYR2 Chr:1q42.1-q43
24	98	G326 G328 G329 G330 G331 G332	214945_at	NY-REN-7 Chr:5q35.3
25	28	G326 G328 G329 G330 G331 G332	204229_at	SLC17A7 Chr:19q13
26	144	G326 G328 G329 G330 G331 G332	229039_at	SYN2 Chr:3p25
27	1	G326 G328 G329 G330 G331 G332	1552714_at	CREG2 Chr:2q12.1
28	131	G326 G328 G329 G330 G331 G332	227053_at	PACSIN1 Chr:6p21.3
29	26	G326 G328 G329 G330 G331 G332	204081_at	NRGN Chr:11q24
30	73	G326 G328 G329 G330 G331 G332	210247_at	SYN2 Chr:3p25
31	109	G326 G328 G329 G330 G331 G332	219659_at	ATP8A2 Chr:13q12-13
32	34	G326 G328 G329 G330 G331 G332	204546_at	KIAA0513 Chr:16q24.1
33	210	G326 G328 G329 G330 G331 G332	243929_at	--- ---
34	9	G326 G328 G329 G330 G331 G332	1556096_s_at	UNC13C Chr:15q21.1
35	71	G326 G328 G329 G330 G331 G332	210040_at	SLC12A5 Chr:20q13.12
36	171	G326 G328 G329 G330 G331 G332	232426_at	--- ---
37	48	G326 G328 G329 G330 G331 G332	205414_s_at	KIAA0672 Chr:17p12
38	15	G326 G328 G329 G330 G331 G332	1568612_at	GABRG2 Chr:5q31.1-q33.1
39	65	G326 G328 G329 G330 G331 G332	209556_at	NCDN Chr:1p34.3
40	96	G326 G328 G329 G330 G331 G332	214811_at	KIAA0318 Chr:12q24.33
41	197	G326 G328 G329 G330 G331 G332	239765_at	--- ---
42	110	G326 G328 G329 G330 G331 G332	219671_at	HPCAL4 Chr:1p34.2
43	129	G326 G328 G329 G330 G331 G332	226382_at	LOC283070 Chr:10p14
44	159	G326 G328 G329 G330 G331 G332	230551_at	--- ---
45	173	G326 G328 G329 G330 G331 G332	233139_at	--- ---
46	37	G326 G328 G329 G330 G331 G332	204697_s_at	CHGA Chr:14q32
47	126	G326 G328 G329 G330 G331 G332	225111_s_at	NAPB Chr:20p12.3-p11.21
48	8	G326 G328 G329 G330 G331 G332	1556095_at	UNC13C Chr:15q21.1
49	108	G326 G328 G329 G330 G331 G332	219425_at	SULT4A1 Chr:22q13.2-q13.31
50	123	G326 G328 G329 G330 G331 G332	224209_s_at	GDA Chr:9q21.11-21.33
51	183	G326 G328 G329 G330 G331 G332	236456_at	PTPN5 Chr:11p15.1
52	18	G326 G328 G329 G330 G331 G332	202507_s_at	SNAP25 Chr:20p12-p11.2
53	25	G326 G328 G329 G330 G331 G332	203999_at	SYT1 Chr:12cen-q21
54	76	G326 G328 G329 G330 G331 G332	213040_s_at	NPTXR Chr:22q13.1
55	12	G325 G328 G329 G330 G331 G332	1557122_s_at	--- ---
56	204	G325 G328 G329 G330 G331 G332	242344_at	--- ---
57	63	G325 G328 G329 G330 G331 G332	206678_at	GABRA1 Chr:5q34-q35
58	72	G325 G328 G329 G330 G331 G332	210227_at	DLGAP2 Chr:8p23
59	211	G325 G328 G329 G330 G331 G332	244118_at	GABRA1 Chr:5q34-q35
60	124	G325 G328 G329 G330 G331 G332	224650_at	MAL2 Chr:8q23
61	172	G325 G328 G329 G330 G331 G332	233002_at	KIAA1622 Chr:14q32.2
62	53	G325 G328 G329 G330 G331 G332	205827_at	CCK Chr:3p22-p21.3
63	24	G325 G328 G329 G330 G331 G332	203998_s_at	SYT1 Chr:12cen-q21
64	127	G325 G328 G329 G330 G331 G332	225792_at	--- ---
65	132	G325 G328 G329 G330 G331 G332	227226_at	C6orf117 Chr:6q15
66	199	G325 G328 G329 G330 G331 G332	241382_at	--- ---
67	62	G325 G328 G329 G330 G331 G332	206552_s_at	TAC1 Chr:7q21-q22
68	64	G325 G328 G329 G330 G331 G332	206780_at	GAD2 Chr:10p11.23
69	60	G325 G328 G329 G330 G331 G332	206382_s_at	BDNF Chr:11p13
70	3	G325 G328 G329 G330 G331 G332	1553864_at	DKFZp761H2121 Chr:10q26.13
71	185	G325 G328 G329 G330 G331 G332	237384_x_at	--- ---
72	213	G325 G328 G329 G330 G331 G332	52837_at	KIAA1644 Chr:22q13
73	112	G325 G328 G329 G330 G331 G332	220030_at	STYK1 Chr:12p13.31
74	11	G328 G329 G330 G331 G332	1556366_s_at	FLJ33708 Chr:6p24.3
75	103	G328 G329 G330 G331 G332	216086_at	SV2C Chr:5q13.3
76	170	G328 G329 G330 G331 G332	232411_at	--- ---
77	202	G328 G329 G330 G331 G332	241807_x_at	--- ---
78	141	G328 G329 G330 G331 G332	228262_at	FLJ14503 Chr:xp22.13
79	155	G328 G329 G330 G331 G332	230255_at	GABRD Chr:1p36.3
80	153	G328 G329 G330 G331 G332	230137_at	FLJ30834 Chr:4q27
81	194	G328 G329 G330 G331 G332	239579_at	ABHD7 Chr:1p22.1
82	51	G328 G329 G330 G331 G332	205691_at	SYNGR3 Chr:16p13
83	182	G327 G328 G329 G330 G331 G332	236448_at	UNC5A Chr:5q35.3
84	27	G327 G328 G329 G330 G331 G332	204134_at	PDE2A Chr:11q13.3
85	38	G327 G328 G329 G330 G331 G332	204722_at	SCN3B Chr:11q24.1
86	121	G327 G328 G329 G330 G331 G332	223654_s_at	BRUNOL4 Chr:18q12
87	191	G327 G328 G329 G330 G331 G332	238966_at	BRUNOL4 Chr:18q12
88	39	G327 G328 G329 G330 G331 G332	204723_at	SCN3B Chr:11q24.1
89	208	G327 G328 G329 G330 G331 G332	243666_at	BRUNOL4 Chr:18q12
90	156	G327 G328 G329 G330 G331 G332	230262_at	--- ---
91	99	G327 G328 G329 G330 G331 G332	214956_at	--- ---
92	91	G327 G328 G329 G330 G331 G332	214157_at	GNAS Chr:20q13.2-q13.3
93	49	G327 G328 G329 G330 G331 G332	205551_at	SV2B Chr:15q26.1
94	120	G327 G328 G329 G330 G331 G332	223529_at	SYT4 Chr:18q12.3
95	70	G327 G328 G329 G330 G331 G332	210016_at	MYT1L Chr:2p25.3
96	176	G327 G328 G329 G330 G331 G332	235066_at	MAP4 Chr:3p21
97	92	G327 G328 G329 G330 G331 G332	214230_at	CDC42 Chr:1p36.1
98	190	G327 G328 G329 G330 G331 G332	238786_at	--- ---
99	206	G327 G328 G329 G330 G331 G332	242999_at	ARHGEF7 Chr:13q34
100	122	G327 G328 G329 G330 G331 G332	224164_at	TPM3 Chr:1q21.2
101	6	G327 G328 G329 G330 G331 G332	1555958_at	CRTAC1 Chr:10q22
102	32	G327 G328 G329 G330 G331 G332	204465_s_at	INA Chr:10q24.33
103	149	G327 G328 G329 G330 G331 G332	229300_at	--- ---
104	104	G327 G328 G329 G330 G331 G332	218623_at	HMP19 Chr:5q35.2
105	151	G327 G328 G329 G330 G331 G332	229823_at	--- ---
106	157	G327 G328 G329 G330 G331 G332	230287_at	RUTBC2 Chr:22q11.23
107	17	G327 G328 G329 G330 G331 G332	202260_s_at	STXBP1 Chr:9q34.1
108	128	G327 G328 G329 G330 G331 G332	226086_at	SYT13 Chr:11p12-p11
109	152	G327 G328 G329 G330 G331 G332	230076_at	FLJ10156 Chr:17p13.2
110	29	G327 G328 G329 G330 G331 G332	204260_at	CHGB Chr:20pter-p12
111	74	G327 G328 G329 G330 G331 G332	210721_s_at	PAK7 Chr:20p12
112	175	G327 G328 G329 G330 G331 G332	234303_s_at	GPR85 Chr:7q31
113	118	G327 G328 G329 G330 G331 G332	223362_s_at	38233 Chr:22q13.2
114	203	G327 G328 G329 G330 G331 G332	242193_at	--- Chr:8q12.3
115	158	G327 G328 G329 G330 G331 G332	230497_at	BRUNOL5 Chr:19p13
116	130	G327 G328 G329 G330 G331 G332	226864_at	PKIA Chr:8q21.11
117	180	G327 G328 G329 G330 G331 G332	236024_at	GPM6A Chr:4q34
118	161	G327 G328 G329 G330 G331 G332	230698_at	--- ---
119	33	G327 G328 G329 G330 G331 G332	204513_s_at	ELMO1 Chr:7p14.1
120	145	G327 G328 G329 G330 G331 G332	229057_at	--- ---
121	14	G328 G329 G330 G331 G332	1559545_at	--- ---
122	195	G328 G329 G330 G331 G332	239671_at	--- ---
123	54	G328 G329 G330 G331 G332	206013_s_at	ACTL6 Chr:7q22
124	10	G328 G329 G330 G331 G332	1556351_at	HCN1 Chr:5p12
125	59	G328 G329 G330 G331 G332	206376_at	SLC6A15 Chr:12q21.3
126	41	G328 G329 G330 G331 G332	204730_at	RIMS3 Chr:1pter-p22.2
127	189	G328 G329 G330 G331 G332	238727_at	--- ---
128	36	G328 G329 G330 G331 G332	204675_at	SRD5A1 Chr:5p15
129	42	G328 G329 G330 G331 G332	204743_at	NP25 Chr:3q13.13-q13.2
130	7	G328 G329 G330 G331 G332	1556047_s_at	KIAA1587 Chr:xq13.2
131	4	G328 G329 G330 G331 G332	1554007_at	--- ---
132	93	G328 G329 G330 G331 G332	214376_at	--- ---
133	47	G328 G329 G330 G331 G332	205257_s_at	AMPH Chr:7p14-p13
134	84	G328 G329 G330 G331 G332	213904_at	--- ---
135	89	G328 G329 G330 G331 G332	214098_at	KIAA1107 Chr:1p22.1
136	52	G328 G329 G330 G331 G332	205818_at	DBC1 Chr:9q32-q33
137	66	G328 G329 G330 G331 G332	209583_s_at	MOX2 Chr:3q12-q13
138	35	G328 G329 G330 G331 G332	204584_at	L1CAM Chr:xq28
139	134	G328 G329 G330 G331 G332	227365_at	ATCAY Chr:19p13.3
140	20	G328 G329 G330 G331 G332	203159_at	GLS Chr:2q32-q34
141	57	G329 G330 G331 G332	206196_s_at	RPIP8 Chr:17q21.31
142	97	G329 G330 G331 G332	214874_at	PKP4 Chr:2q23-q31
143	135	G329 G330 G331 G332	227641_at	MGC33974 Chr:16p13.3
144	19	G329 G330 G331 G332	202712_s_at	CKMT1 Chr:15q15
145	50	G329 G330 G331 G332	205635_at	HAPIP Chr:3q21.2
146	86	G329 G330 G331 G332	213938_at	CAST Chr:3p21.31
147	154	G329 G330 G331 G332	230238_at	LOC134548 Chr:5q31.1
148	69	G329 G330 G331 G332	209982_s_at	NRXN2 Chr:11q13
149	106	G329 G330 G331 G332	219308_s_at	AK5 Chr:1p31
150	181	G329 G330 G331 G332	236166_at	LOC285147 Chr:2p25.2
151	23	G329 G330 G331 G332	203911_at	RAP1GA1 Chr:1p36.1-p35
152	43	G329 G330 G331 G332	204763_s_at	GNAO1 Chr:16q13
153	148	G329 G330 G331 G332	229294_at	JPH3 Chr:16q24.3
154	162	G329 G330 G331 G332	230932_at	--- ---
155	164	G329 G330 G331 G332	231325_at	UNC5D Chr:8p12-p11.23
156	184	G329 G330 G331 G332	236656_s_at	--- ---
157	85	G329 G330 G331 G332	213921_at	SST Chr:3q28
158	113	G329 G330 G331 G332	220359_s_at	ARPP-21 Chr:3p22.1
159	40	G330 G331 G332	204726_at	CDH13 Chr:16q24.2-q24.3
160	187	G330 G331 G332	238073_at	ELAVL4 Chr:1p34
161	55	G330 G331 G332	206051_at	ELAVL4 Chr:1p34
162	196	G330 G331 G332	239678_at	--- ---
163	186	G330 G331 G332	237802_at	KIAA1889 Chr:8q11.23
164	160	G330 G331 G332	230692_at	LOC157503 Chr:8q11.23
165	178	G330 G331 G332	235230_at	--- ---
166	90	G330 G331 G332	214111_at	OPCML Chr:11q25
167	167	G330 G331 G332	231935_at	ARPP-21 Chr:3p22.1
168	88	G330 G331 G332	214046_at	--- ---
169	163	G330 G331 G332	231166_at	GPR155 Chr:2q31.1
170	94	G330 G331 G332	214607_at	PAK3 Chr:xq22.3-q23
171	146	G330 G331 G332	229201_at	--- ---
172	142	G330 G331 G332	228414_at	LOC142955 Chr:10q22.3
173	212	G330 G331 G332	244680_at	GLRB Chr:4q31.3
174	177	G330 G331 G332	235227_at	--- ---
175	147	G330 G331 G332	229254_at	DKFZp761N1114 Chr:1q32.1
176	193	G330 G331 G332	239357_at	--- ---
177	67	G330 G331 G332	209683_at	DKFZP566A1524 Chr:2p24.3
178	75	G330 G331 G332	212473_s_at	MICAL2 Chr:11p15.3
179	166	G330 G331 G332	231771_at	GJB6 Chr:13q12
180	111	G330 G331 G332	219937_at	TRHDE Chr:12q15-q21
181	200	G330 G331 G332	241399_at	TAFA2 Chr:12q13.3-q14.1
182	46	G331 G332	205113_at	NEF3 Chr:8p21
183	77	G331 G332	213122_at	TSPYL5 Chr:8q22.1
184	78	G331 G332	213172_at	TTC9 Chr:14q24.1
185	136	G331 G332	227690_at	GABRB3 Chr:15q11.2-q12
186	150	G331 G332	229724_at	GABRB3 Chr:15q11.2-q12
187	139	G331 G332	227830_at	GABRB3 Chr:15q11.2-q12
188	105	G331 G332	218720_x_at	PSK-1 Chr:16p12.1
189	207	G331 G332	243163_at	--- ---
190	168	G331 G332	231986_at	RIMS1 Chr:6q12-q13
191	115	G331 G332	221792_at	--- ---
192	44	G332	204869_at	PCSK2 Chr:20p11.2
193	140	G332	228194_s_at	SORCS1 Chr:10q23-q25
194	205	G332	242404_at	--- ---
195	61	G332	206456_at	GABRA5 Chr:15q11.2-q12
196	138	G332	227817_at	PRKCB1 Chr:16p11.2
197	188	G332	238673_at	--- ---
198	80	G332	213280_at	GARNL4 Chr:17p13.3
199	133	G332	227240_at	NGEF Chr:2q37
200	101	G332	215241_at	TMEM16C Chr:11p14.3
201	58		206290_s_at	RGS7 Chr:1q43
202	143		229029_at	--- ---
203	192		239293_at	VMP Chr:6p22.1
204	117		223340_at	SPG3A Chr:14q22.1
205	83		213386_at	--- ---
206	45		204953_at	SNAP91 Chr:6q15
207	95		214762_at	ATP6V1G2 Chr:6p21.3
208	125		224801_at	NDFIP2 Chr:13q22.2
209	179		235486_at	MGC34830 Chr:11p13
210	107		219368_at	NAP1L2 Chr:xq13
211	137		227702_at	CYP4X1 Chr:1p33
212	169		232305_at	HMGCLL1 Chr:6p12.1
213	201		241672_at	LOC400120 Chr:13q13.2

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:19:43

G21_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC