G21_using_S3

Super-paramagnetic Clustering of 213 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=63)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	60	206382_s_at	BDNF Chr:11p13
2	52	205818_at	DBC1 Chr:9q32-q33
3	23	203911_at	RAP1GA1 Chr:1p36.1-p35
4	73	210247_at	SYN2 Chr:3p25
5	62	206552_s_at	TAC1 Chr:7q21-q22
6	76	213040_s_at	NPTXR Chr:22q13.1
7	91	214157_at	GNAS Chr:20q13.2-q13.3
8	37	204697_s_at	CHGA Chr:14q32
9	19	202712_s_at	CKMT1 Chr:15q15
10	39	204723_at	SCN3B Chr:11q24.1
11	69	209982_s_at	NRXN2 Chr:11q13
12	28	204229_at	SLC17A7 Chr:19q13
13	75	212473_s_at	MICAL2 Chr:11p15.3
14	100	215116_s_at	DNM1 Chr:9q34
15	103	216086_at	SV2C Chr:5q13.3
16	47	205257_s_at	AMPH Chr:7p14-p13
17	108	219425_at	SULT4A1 Chr:22q13.2-q13.31
18	13	1557961_s_at	--- ---
19	27	204134_at	PDE2A Chr:11q13.3
20	105	218720_x_at	PSK-1 Chr:16p12.1
21	65	209556_at	NCDN Chr:1p34.3
22	17	202260_s_at	STXBP1 Chr:9q34.1
23	20	203159_at	GLS Chr:2q32-q34
24	54	206013_s_at	ACTL6 Chr:7q22
25	109	219659_at	ATP8A2 Chr:13q12-13
26	29	204260_at	CHGB Chr:20pter-p12
27	57	206196_s_at	RPIP8 Chr:17q21.31
28	31	204339_s_at	RGS4 Chr:1q23.2
29	26	204081_at	NRGN Chr:11q24
30	6	1555958_at	CRTAC1 Chr:10q22
31	38	204722_at	SCN3B Chr:11q24.1
32	53	205827_at	CCK Chr:3p22-p21.3
33	85	213921_at	SST Chr:3q28
34	5	1555370_a_at	CAMTA1 Chr:1p36.23
35	11	1556366_s_at	FLJ33708 Chr:6p24.3
36	46	205113_at	NEF3 Chr:8p21
37	51	205691_at	SYNGR3 Chr:16p13
38	113	220359_s_at	ARPP-21 Chr:3p22.1
39	2	1553422_s_at	A2BP1 Chr:16p13.3
40	16	202073_at	OPTN Chr:10p14
41	30	204337_at	RGS4 Chr:1q23.2
42	99	214956_at	--- ---
43	21	203797_at	VSNL1 Chr:2p24.3
44	41	204730_at	RIMS3 Chr:1pter-p22.2
45	86	213938_at	CAST Chr:3p21.31
46	110	219671_at	HPCAL4 Chr:1p34.2
47	67	209683_at	DKFZP566A1524 Chr:2p24.3
48	89	214098_at	KIAA1107 Chr:1p22.1
49	9	1556096_s_at	UNC13C Chr:15q21.1
50	32	204465_s_at	INA Chr:10q24.33
51	33	204513_s_at	ELMO1 Chr:7p14.1
52	40	204726_at	CDH13 Chr:16q24.2-q24.3
53	61	206456_at	GABRA5 Chr:15q11.2-q12
54	66	209583_s_at	MOX2 Chr:3q12-q13
55	92	214230_at	CDC42 Chr:1p36.1
56	98	214945_at	NY-REN-7 Chr:5q35.3
57	111	219937_at	TRHDE Chr:12q15-q21
58	114	221217_s_at	A2BP1 Chr:16p13.3
59	1	1552714_at	CREG2 Chr:2q12.1
60	3	1553864_at	DKFZp761H2121 Chr:10q26.13
61	4	1554007_at	--- ---
62	7	1556047_s_at	KIAA1587 Chr:xq13.2
63	8	1556095_at	UNC13C Chr:15q21.1
64	10	1556351_at	HCN1 Chr:5p12
65	12	1557122_s_at	--- ---
66	14	1559545_at	--- ---
67	15	1568612_at	GABRG2 Chr:5q31.1-q33.1
68	18	202507_s_at	SNAP25 Chr:20p12-p11.2
69	22	203798_s_at	VSNL1 Chr:2p24.3
70	24	203998_s_at	SYT1 Chr:12cen-q21
71	25	203999_at	SYT1 Chr:12cen-q21
72	34	204546_at	KIAA0513 Chr:16q24.1
73	35	204584_at	L1CAM Chr:xq28
74	36	204675_at	SRD5A1 Chr:5p15
75	42	204743_at	NP25 Chr:3q13.13-q13.2
76	44	204869_at	PCSK2 Chr:20p11.2
77	45	204953_at	SNAP91 Chr:6q15
78	48	205414_s_at	KIAA0672 Chr:17p12
79	49	205551_at	SV2B Chr:15q26.1
80	50	205635_at	HAPIP Chr:3q21.2
81	55	206051_at	ELAVL4 Chr:1p34
82	56	206084_at	PTPRR Chr:12q15
83	58	206290_s_at	RGS7 Chr:1q43
84	59	206376_at	SLC6A15 Chr:12q21.3
85	63	206678_at	GABRA1 Chr:5q34-q35
86	64	206780_at	GAD2 Chr:10p11.23
87	70	210016_at	MYT1L Chr:2p25.3
88	71	210040_at	SLC12A5 Chr:20q13.12
89	72	210227_at	DLGAP2 Chr:8p23
90	74	210721_s_at	PAK7 Chr:20p12
91	77	213122_at	TSPYL5 Chr:8q22.1
92	78	213172_at	TTC9 Chr:14q24.1
93	79	213268_at	CAMTA1 Chr:1p36.23
94	80	213280_at	GARNL4 Chr:17p13.3
95	81	213307_at	SHANK2 Chr:11q13.2
96	82	213308_at	SHANK2 Chr:11q13.2
97	83	213386_at	--- ---
98	84	213904_at	--- ---
99	87	214044_at	RYR2 Chr:1q42.1-q43
100	88	214046_at	--- ---
101	90	214111_at	OPCML Chr:11q25
102	93	214376_at	--- ---
103	94	214607_at	PAK3 Chr:xq22.3-q23
104	95	214762_at	ATP6V1G2 Chr:6p21.3
105	96	214811_at	KIAA0318 Chr:12q24.33
106	97	214874_at	PKP4 Chr:2q23-q31
107	101	215241_at	TMEM16C Chr:11p14.3
108	102	215307_at	--- ---
109	104	218623_at	HMP19 Chr:5q35.2
110	106	219308_s_at	AK5 Chr:1p31
111	107	219368_at	NAP1L2 Chr:xq13
112	112	220030_at	STYK1 Chr:12p13.31
113	115	221792_at	--- ---
114	116	221801_x_at	NEFL Chr:8p21
115	117	223340_at	SPG3A Chr:14q22.1
116	120	223529_at	SYT4 Chr:18q12.3
117	122	224164_at	TPM3 Chr:1q21.2
118	123	224209_s_at	GDA Chr:9q21.11-21.33
119	124	224650_at	MAL2 Chr:8q23
120	125	224801_at	NDFIP2 Chr:13q22.2
121	126	225111_s_at	NAPB Chr:20p12.3-p11.21
122	128	226086_at	SYT13 Chr:11p12-p11
123	130	226864_at	PKIA Chr:8q21.11
124	135	227641_at	MGC33974 Chr:16p13.3
125	136	227690_at	GABRB3 Chr:15q11.2-q12
126	137	227702_at	CYP4X1 Chr:1p33
127	138	227817_at	PRKCB1 Chr:16p11.2
128	139	227830_at	GABRB3 Chr:15q11.2-q12
129	140	228194_s_at	SORCS1 Chr:10q23-q25
130	143	229029_at	--- ---
131	145	229057_at	--- ---
132	146	229201_at	--- ---
133	147	229254_at	DKFZp761N1114 Chr:1q32.1
134	148	229294_at	JPH3 Chr:16q24.3
135	149	229300_at	--- ---
136	150	229724_at	GABRB3 Chr:15q11.2-q12
137	151	229823_at	--- ---
138	153	230137_at	FLJ30834 Chr:4q27
139	154	230238_at	LOC134548 Chr:5q31.1
140	156	230262_at	--- ---
141	159	230551_at	--- ---
142	160	230692_at	LOC157503 Chr:8q11.23
143	161	230698_at	--- ---
144	162	230932_at	--- ---
145	164	231325_at	UNC5D Chr:8p12-p11.23
146	167	231935_at	ARPP-21 Chr:3p22.1
147	169	232305_at	HMGCLL1 Chr:6p12.1
148	170	232411_at	--- ---
149	171	232426_at	--- ---
150	172	233002_at	KIAA1622 Chr:14q32.2
151	174	233499_at	KIAA1365 Chr:1p31.2
152	176	235066_at	MAP4 Chr:3p21
153	177	235227_at	--- ---
154	180	236024_at	GPM6A Chr:4q34
155	181	236166_at	LOC285147 Chr:2p25.2
156	185	237384_x_at	--- ---
157	186	237802_at	KIAA1889 Chr:8q11.23
158	190	238786_at	--- ---
159	191	238966_at	BRUNOL4 Chr:18q12
160	193	239357_at	--- ---
161	194	239579_at	ABHD7 Chr:1p22.1
162	195	239671_at	--- ---
163	196	239678_at	--- ---
164	197	239765_at	--- ---
165	198	239767_at	--- ---
166	200	241399_at	TAFA2 Chr:12q13.3-q14.1
167	204	242344_at	--- ---
168	205	242404_at	--- ---
169	206	242999_at	ARHGEF7 Chr:13q34
170	208	243666_at	BRUNOL4 Chr:18q12
171	209	243681_at	SHANK2 Chr:11q13.2
172	211	244118_at	GABRA1 Chr:5q34-q35
173	212	244680_at	GLRB Chr:4q31.3
174	141	228262_at	FLJ14503 Chr:xp22.13
175	142	228414_at	LOC142955 Chr:10q22.3
176	152	230076_at	FLJ10156 Chr:17p13.2
177	166	231771_at	GJB6 Chr:13q12
178	168	231986_at	RIMS1 Chr:6q12-q13
179	178	235230_at	--- ---
180	179	235486_at	MGC34830 Chr:11p13
181	188	238673_at	--- ---
182	192	239293_at	VMP Chr:6p22.1
183	201	241672_at	LOC400120 Chr:13q13.2
184	202	241807_x_at	--- ---
185	207	243163_at	--- ---
186	213	52837_at	KIAA1644 Chr:22q13
187	175	234303_s_at	GPR85 Chr:7q31
188	184	236656_s_at	--- ---
189	210	243929_at	--- ---
190	131	227053_at	PACSIN1 Chr:6p21.3
191	134	227365_at	ATCAY Chr:19p13.3
192	173	233139_at	--- ---
193	203	242193_at	--- Chr:8q12.3
194	189	238727_at	--- ---
195	127	225792_at	--- ---
196	158	230497_at	BRUNOL5 Chr:19p13
197	144	229039_at	SYN2 Chr:3p25
198	163	231166_at	GPR155 Chr:2q31.1
199	155	230255_at	GABRD Chr:1p36.3
200	199	241382_at	--- ---
201	133	227240_at	NGEF Chr:2q37
202	187	238073_at	ELAVL4 Chr:1p34
203	68	209726_at	CA11 Chr:19q13.3
204	165	231489_x_at	--- ---
205	121	223654_s_at	BRUNOL4 Chr:18q12
206	183	236456_at	PTPN5 Chr:11p15.1
207	129	226382_at	LOC283070 Chr:10p14
208	118	223362_s_at	38233 Chr:22q13.2
209	182	236448_at	UNC5A Chr:5q35.3
210	43	204763_s_at	GNAO1 Chr:16q13
211	132	227226_at	C6orf117 Chr:6q15
212	157	230287_at	RUTBC2 Chr:22q11.23
213	119	223500_at	CPLX1 Chr:4p16.3

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	63
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:13:22

G21_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=63)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC