G21_using_S2

Super-paramagnetic Clustering of 213 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=49)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	39	204723_at	SCN3B Chr:11q24.1
2	5	1555370_a_at	CAMTA1 Chr:1p36.23
3	88	214046_at	--- ---
4	8	1556095_at	UNC13C Chr:15q21.1
5	11	1556366_s_at	FLJ33708 Chr:6p24.3
6	16	202073_at	OPTN Chr:10p14
7	20	203159_at	GLS Chr:2q32-q34
8	36	204675_at	SRD5A1 Chr:5p15
9	40	204726_at	CDH13 Chr:16q24.2-q24.3
10	41	204730_at	RIMS3 Chr:1pter-p22.2
11	50	205635_at	HAPIP Chr:3q21.2
12	56	206084_at	PTPRR Chr:12q15
13	60	206382_s_at	BDNF Chr:11p13
14	62	206552_s_at	TAC1 Chr:7q21-q22
15	68	209726_at	CA11 Chr:19q13.3
16	72	210227_at	DLGAP2 Chr:8p23
17	79	213268_at	CAMTA1 Chr:1p36.23
18	84	213904_at	--- ---
19	87	214044_at	RYR2 Chr:1q42.1-q43
20	91	214157_at	GNAS Chr:20q13.2-q13.3
21	34	204546_at	KIAA0513 Chr:16q24.1
22	92	214230_at	CDC42 Chr:1p36.1
23	93	214376_at	--- ---
24	98	214945_at	NY-REN-7 Chr:5q35.3
25	100	215116_s_at	DNM1 Chr:9q34
26	102	215307_at	--- ---
27	103	216086_at	SV2C Chr:5q13.3
28	106	219308_s_at	AK5 Chr:1p31
29	2	1553422_s_at	A2BP1 Chr:16p13.3
30	46	205113_at	NEF3 Chr:8p21
31	101	215241_at	TMEM16C Chr:11p14.3
32	9	1556096_s_at	UNC13C Chr:15q21.1
33	10	1556351_at	HCN1 Chr:5p12
34	21	203797_at	VSNL1 Chr:2p24.3
35	28	204229_at	SLC17A7 Chr:19q13
36	85	213921_at	SST Chr:3q28
37	22	203798_s_at	VSNL1 Chr:2p24.3
38	25	203999_at	SYT1 Chr:12cen-q21
39	64	206780_at	GAD2 Chr:10p11.23
40	4	1554007_at	--- ---
41	24	203998_s_at	SYT1 Chr:12cen-q21
42	53	205827_at	CCK Chr:3p22-p21.3
43	78	213172_at	TTC9 Chr:14q24.1
44	99	214956_at	--- ---
45	95	214762_at	ATP6V1G2 Chr:6p21.3
46	49	205551_at	SV2B Chr:15q26.1
47	26	204081_at	NRGN Chr:11q24
48	90	214111_at	OPCML Chr:11q25
49	12	1557122_s_at	--- ---
50	14	1559545_at	--- ---
51	59	206376_at	SLC6A15 Chr:12q21.3
52	77	213122_at	TSPYL5 Chr:8q22.1
53	109	219659_at	ATP8A2 Chr:13q12-13
54	1	1552714_at	CREG2 Chr:2q12.1
55	6	1555958_at	CRTAC1 Chr:10q22
56	7	1556047_s_at	KIAA1587 Chr:xq13.2
57	13	1557961_s_at	--- ---
58	15	1568612_at	GABRG2 Chr:5q31.1-q33.1
59	17	202260_s_at	STXBP1 Chr:9q34.1
60	18	202507_s_at	SNAP25 Chr:20p12-p11.2
61	19	202712_s_at	CKMT1 Chr:15q15
62	23	203911_at	RAP1GA1 Chr:1p36.1-p35
63	27	204134_at	PDE2A Chr:11q13.3
64	30	204337_at	RGS4 Chr:1q23.2
65	31	204339_s_at	RGS4 Chr:1q23.2
66	32	204465_s_at	INA Chr:10q24.33
67	33	204513_s_at	ELMO1 Chr:7p14.1
68	35	204584_at	L1CAM Chr:xq28
69	37	204697_s_at	CHGA Chr:14q32
70	38	204722_at	SCN3B Chr:11q24.1
71	42	204743_at	NP25 Chr:3q13.13-q13.2
72	43	204763_s_at	GNAO1 Chr:16q13
73	44	204869_at	PCSK2 Chr:20p11.2
74	45	204953_at	SNAP91 Chr:6q15
75	47	205257_s_at	AMPH Chr:7p14-p13
76	48	205414_s_at	KIAA0672 Chr:17p12
77	51	205691_at	SYNGR3 Chr:16p13
78	52	205818_at	DBC1 Chr:9q32-q33
79	54	206013_s_at	ACTL6 Chr:7q22
80	55	206051_at	ELAVL4 Chr:1p34
81	57	206196_s_at	RPIP8 Chr:17q21.31
82	58	206290_s_at	RGS7 Chr:1q43
83	61	206456_at	GABRA5 Chr:15q11.2-q12
84	63	206678_at	GABRA1 Chr:5q34-q35
85	65	209556_at	NCDN Chr:1p34.3
86	66	209583_s_at	MOX2 Chr:3q12-q13
87	69	209982_s_at	NRXN2 Chr:11q13
88	70	210016_at	MYT1L Chr:2p25.3
89	71	210040_at	SLC12A5 Chr:20q13.12
90	73	210247_at	SYN2 Chr:3p25
91	74	210721_s_at	PAK7 Chr:20p12
92	75	212473_s_at	MICAL2 Chr:11p15.3
93	76	213040_s_at	NPTXR Chr:22q13.1
94	80	213280_at	GARNL4 Chr:17p13.3
95	81	213307_at	SHANK2 Chr:11q13.2
96	82	213308_at	SHANK2 Chr:11q13.2
97	83	213386_at	--- ---
98	86	213938_at	CAST Chr:3p21.31
99	89	214098_at	KIAA1107 Chr:1p22.1
100	94	214607_at	PAK3 Chr:xq22.3-q23
101	96	214811_at	KIAA0318 Chr:12q24.33
102	97	214874_at	PKP4 Chr:2q23-q31
103	104	218623_at	HMP19 Chr:5q35.2
104	105	218720_x_at	PSK-1 Chr:16p12.1
105	108	219425_at	SULT4A1 Chr:22q13.2-q13.31
106	110	219671_at	HPCAL4 Chr:1p34.2
107	113	220359_s_at	ARPP-21 Chr:3p22.1
108	114	221217_s_at	A2BP1 Chr:16p13.3
109	117	223340_at	SPG3A Chr:14q22.1
110	118	223362_s_at	38233 Chr:22q13.2
111	119	223500_at	CPLX1 Chr:4p16.3
112	120	223529_at	SYT4 Chr:18q12.3
113	121	223654_s_at	BRUNOL4 Chr:18q12
114	122	224164_at	TPM3 Chr:1q21.2
115	129	226382_at	LOC283070 Chr:10p14
116	130	226864_at	PKIA Chr:8q21.11
117	132	227226_at	C6orf117 Chr:6q15
118	134	227365_at	ATCAY Chr:19p13.3
119	135	227641_at	MGC33974 Chr:16p13.3
120	136	227690_at	GABRB3 Chr:15q11.2-q12
121	138	227817_at	PRKCB1 Chr:16p11.2
122	139	227830_at	GABRB3 Chr:15q11.2-q12
123	140	228194_s_at	SORCS1 Chr:10q23-q25
124	142	228414_at	LOC142955 Chr:10q22.3
125	143	229029_at	--- ---
126	29	204260_at	CHGB Chr:20pter-p12
127	145	229057_at	--- ---
128	146	229201_at	--- ---
129	148	229294_at	JPH3 Chr:16q24.3
130	149	229300_at	--- ---
131	150	229724_at	GABRB3 Chr:15q11.2-q12
132	151	229823_at	--- ---
133	155	230255_at	GABRD Chr:1p36.3
134	156	230262_at	--- ---
135	158	230497_at	BRUNOL5 Chr:19p13
136	159	230551_at	--- ---
137	160	230692_at	LOC157503 Chr:8q11.23
138	161	230698_at	--- ---
139	163	231166_at	GPR155 Chr:2q31.1
140	167	231935_at	ARPP-21 Chr:3p22.1
141	168	231986_at	RIMS1 Chr:6q12-q13
142	170	232411_at	--- ---
143	171	232426_at	--- ---
144	173	233139_at	--- ---
145	176	235066_at	MAP4 Chr:3p21
146	177	235227_at	--- ---
147	178	235230_at	--- ---
148	182	236448_at	UNC5A Chr:5q35.3
149	186	237802_at	KIAA1889 Chr:8q11.23
150	187	238073_at	ELAVL4 Chr:1p34
151	188	238673_at	--- ---
152	190	238786_at	--- ---
153	191	238966_at	BRUNOL4 Chr:18q12
154	195	239671_at	--- ---
155	196	239678_at	--- ---
156	200	241399_at	TAFA2 Chr:12q13.3-q14.1
157	203	242193_at	--- Chr:8q12.3
158	207	243163_at	--- ---
159	208	243666_at	BRUNOL4 Chr:18q12
160	209	243681_at	SHANK2 Chr:11q13.2
161	212	244680_at	GLRB Chr:4q31.3
162	213	52837_at	KIAA1644 Chr:22q13
163	154	230238_at	LOC134548 Chr:5q31.1
164	126	225111_s_at	NAPB Chr:20p12.3-p11.21
165	162	230932_at	--- ---
166	111	219937_at	TRHDE Chr:12q15-q21
167	128	226086_at	SYT13 Chr:11p12-p11
168	131	227053_at	PACSIN1 Chr:6p21.3
169	123	224209_s_at	GDA Chr:9q21.11-21.33
170	180	236024_at	GPM6A Chr:4q34
171	198	239767_at	--- ---
172	204	242344_at	--- ---
173	205	242404_at	--- ---
174	166	231771_at	GJB6 Chr:13q12
175	179	235486_at	MGC34830 Chr:11p13
176	183	236456_at	PTPN5 Chr:11p15.1
177	192	239293_at	VMP Chr:6p22.1
178	112	220030_at	STYK1 Chr:12p13.31
179	144	229039_at	SYN2 Chr:3p25
180	193	239357_at	--- ---
181	199	241382_at	--- ---
182	210	243929_at	--- ---
183	137	227702_at	CYP4X1 Chr:1p33
184	141	228262_at	FLJ14503 Chr:xp22.13
185	165	231489_x_at	--- ---
186	197	239765_at	--- ---
187	202	241807_x_at	--- ---
188	115	221792_at	--- ---
189	116	221801_x_at	NEFL Chr:8p21
190	124	224650_at	MAL2 Chr:8q23
191	127	225792_at	--- ---
192	133	227240_at	NGEF Chr:2q37
193	147	229254_at	DKFZp761N1114 Chr:1q32.1
194	152	230076_at	FLJ10156 Chr:17p13.2
195	153	230137_at	FLJ30834 Chr:4q27
196	164	231325_at	UNC5D Chr:8p12-p11.23
197	169	232305_at	HMGCLL1 Chr:6p12.1
198	172	233002_at	KIAA1622 Chr:14q32.2
199	174	233499_at	KIAA1365 Chr:1p31.2
200	175	234303_s_at	GPR85 Chr:7q31
201	184	236656_s_at	--- ---
202	185	237384_x_at	--- ---
203	189	238727_at	--- ---
204	3	1553864_at	DKFZp761H2121 Chr:10q26.13
205	194	239579_at	ABHD7 Chr:1p22.1
206	201	241672_at	LOC400120 Chr:13q13.2
207	206	242999_at	ARHGEF7 Chr:13q34
208	211	244118_at	GABRA1 Chr:5q34-q35
209	125	224801_at	NDFIP2 Chr:13q22.2
210	107	219368_at	NAP1L2 Chr:xq13
211	181	236166_at	LOC285147 Chr:2p25.2
212	67	209683_at	DKFZP566A1524 Chr:2p24.3
213	157	230287_at	RUTBC2 Chr:22q11.23

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	49
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:10:30

G21_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=49)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC