G21_using_S1

Super-paramagnetic Clustering of 213 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	5		1555370_a_at	CAMTA1 Chr:1p36.23
2	79		213268_at	CAMTA1 Chr:1p36.23
3	2		1553422_s_at	A2BP1 Chr:16p13.3
4	114		221217_s_at	A2BP1 Chr:16p13.3
5	31		204339_s_at	RGS4 Chr:1q23.2
6	30		204337_at	RGS4 Chr:1q23.2
7	116		221801_x_at	NEFL Chr:8p21
8	56		206084_at	PTPRR Chr:12q15
9	210		243929_at	--- ---
10	198		239767_at	--- ---
11	174		233499_at	KIAA1365 Chr:1p31.2
12	187		238073_at	ELAVL4 Chr:1p34
13	55		206051_at	ELAVL4 Chr:1p34
14	186		237802_at	KIAA1889 Chr:8q11.23
15	160		230692_at	LOC157503 Chr:8q11.23
16	40		204726_at	CDH13 Chr:16q24.2-q24.3
17	94	G324	214607_at	PAK3 Chr:xq22.3-q23
18	146	G324	229201_at	--- ---
19	13	G323 G324	1557961_s_at	--- ---
20	16	G323 G324	202073_at	OPTN Chr:10p14
21	23	G323 G324	203911_at	RAP1GA1 Chr:1p36.1-p35
22	139	G323 G324	227830_at	GABRB3 Chr:15q11.2-q12
23	136	G323 G324	227690_at	GABRB3 Chr:15q11.2-q12
24	150	G323 G324	229724_at	GABRB3 Chr:15q11.2-q12
25	167	G323 G324	231935_at	ARPP-21 Chr:3p22.1
26	63	G321 G322 G323 G324	206678_at	GABRA1 Chr:5q34-q35
27	211	G321 G322 G323 G324	244118_at	GABRA1 Chr:5q34-q35
28	124	G321 G322 G323 G324	224650_at	MAL2 Chr:8q23
29	153	G321 G322 G323 G324	230137_at	FLJ30834 Chr:4q27
30	3	G321 G322 G323 G324	1553864_at	DKFZp761H2121 Chr:10q26.13
31	72	G321 G322 G323 G324	210227_at	DLGAP2 Chr:8p23
32	11	G321 G322 G323 G324	1556366_s_at	FLJ33708 Chr:6p24.3
33	172	G321 G322 G323 G324	233002_at	KIAA1622 Chr:14q32.2
34	53	G321 G322 G323 G324	205827_at	CCK Chr:3p22-p21.3
35	112	G321 G322 G323 G324	220030_at	STYK1 Chr:12p13.31
36	61	G321 G322 G323 G324	206456_at	GABRA5 Chr:15q11.2-q12
37	171	G321 G322 G323 G324	232426_at	--- ---
38	50	G321 G322 G323 G324	205635_at	HAPIP Chr:3q21.2
39	24	G321 G322 G323 G324	203998_s_at	SYT1 Chr:12cen-q21
40	8	G321 G322 G323 G324	1556095_at	UNC13C Chr:15q21.1
41	185	G321 G322 G323 G324	237384_x_at	--- ---
42	127	G321 G322 G323 G324	225792_at	--- ---
43	194	G321 G322 G323 G324	239579_at	ABHD7 Chr:1p22.1
44	10	G321 G322 G323 G324	1556351_at	HCN1 Chr:5p12
45	113	G321 G322 G323 G324	220359_s_at	ARPP-21 Chr:3p22.1
46	205	G321 G322 G323 G324	242404_at	--- ---
47	59	G321 G322 G323 G324	206376_at	SLC6A15 Chr:12q21.3
48	111	G321 G322 G323 G324	219937_at	TRHDE Chr:12q15-q21
49	108	G321 G322 G323 G324	219425_at	SULT4A1 Chr:22q13.2-q13.31
50	85	G321 G322 G323 G324	213921_at	SST Chr:3q28
51	44	G321 G322 G323 G324	204869_at	PCSK2 Chr:20p11.2
52	137	G321 G322 G323 G324	227702_at	CYP4X1 Chr:1p33
53	48	G321 G322 G323 G324	205414_s_at	KIAA0672 Chr:17p12
54	138	G321 G322 G323 G324	227817_at	PRKCB1 Chr:16p11.2
55	169	G321 G322 G323 G324	232305_at	HMGCLL1 Chr:6p12.1
56	201	G321 G322 G323 G324	241672_at	LOC400120 Chr:13q13.2
57	202	G321 G322 G323 G324	241807_x_at	--- ---
58	165	G321 G322 G323 G324	231489_x_at	--- ---
59	64	G321 G322 G323 G324	206780_at	GAD2 Chr:10p11.23
60	28	G321 G322 G323 G324	204229_at	SLC17A7 Chr:19q13
61	68	G321 G322 G323 G324	209726_at	CA11 Chr:19q13.3
62	12	G321 G322 G323 G324	1557122_s_at	--- ---
63	26	G321 G322 G323 G324	204081_at	NRGN Chr:11q24
64	131	G321 G322 G323 G324	227053_at	PACSIN1 Chr:6p21.3
65	141	G321 G322 G323 G324	228262_at	FLJ14503 Chr:xp22.13
66	73	G321 G322 G323 G324	210247_at	SYN2 Chr:3p25
67	144	G321 G322 G323 G324	229039_at	SYN2 Chr:3p25
68	46	G321 G322 G323 G324	205113_at	NEF3 Chr:8p21
69	109	G321 G322 G323 G324	219659_at	ATP8A2 Chr:13q12-13
70	9	G321 G322 G323 G324	1556096_s_at	UNC13C Chr:15q21.1
71	213	G321 G322 G323 G324	52837_at	KIAA1644 Chr:22q13
72	204	G321 G322 G323 G324	242344_at	--- ---
73	25	G321 G322 G323 G324	203999_at	SYT1 Chr:12cen-q21
74	37	G321 G322 G323 G324	204697_s_at	CHGA Chr:14q32
75	1	G321 G322 G323 G324	1552714_at	CREG2 Chr:2q12.1
76	71	G321 G322 G323 G324	210040_at	SLC12A5 Chr:20q13.12
77	197	G321 G322 G323 G324	239765_at	--- ---
78	96	G321 G322 G323 G324	214811_at	KIAA0318 Chr:12q24.33
79	126	G321 G322 G323 G324	225111_s_at	NAPB Chr:20p12.3-p11.21
80	99	G321 G322 G323 G324	214956_at	--- ---
81	183	G321 G322 G323 G324	236456_at	PTPN5 Chr:11p15.1
82	128	G321 G322 G323 G324	226086_at	SYT13 Chr:11p12-p11
83	14	G321 G322 G323 G324	1559545_at	--- ---
84	87	G321 G322 G323 G324	214044_at	RYR2 Chr:1q42.1-q43
85	110	G321 G322 G323 G324	219671_at	HPCAL4 Chr:1p34.2
86	34	G321 G322 G323 G324	204546_at	KIAA0513 Chr:16q24.1
87	65	G321 G322 G323 G324	209556_at	NCDN Chr:1p34.3
88	193	G321 G322 G323 G324	239357_at	--- ---
89	129	G321 G322 G323 G324	226382_at	LOC283070 Chr:10p14
90	15	G321 G322 G323 G324	1568612_at	GABRG2 Chr:5q31.1-q33.1
91	51	G321 G322 G323 G324	205691_at	SYNGR3 Chr:16p13
92	133	G321 G322 G323 G324	227240_at	NGEF Chr:2q37
93	170	G321 G322 G323 G324	232411_at	--- ---
94	177	G321 G322 G323 G324	235227_at	--- ---
95	161	G321 G322 G323 G324	230698_at	--- ---
96	190	G321 G322 G323 G324	238786_at	--- ---
97	200	G321 G322 G323 G324	241399_at	TAFA2 Chr:12q13.3-q14.1
98	122	G321 G322 G323 G324	224164_at	TPM3 Chr:1q21.2
99	106	G321 G322 G323 G324	219308_s_at	AK5 Chr:1p31
100	147	G321 G322 G323 G324	229254_at	DKFZp761N1114 Chr:1q32.1
101	159	G321 G322 G323 G324	230551_at	--- ---
102	47	G321 G322 G323 G324	205257_s_at	AMPH Chr:7p14-p13
103	18	G321 G322 G323 G324	202507_s_at	SNAP25 Chr:20p12-p11.2
104	152	G321 G322 G323 G324	230076_at	FLJ10156 Chr:17p13.2
105	191	G322 G323 G324	238966_at	BRUNOL4 Chr:18q12
106	121	G322 G323 G324	223654_s_at	BRUNOL4 Chr:18q12
107	156	G322 G323 G324	230262_at	--- ---
108	208	G322 G323 G324	243666_at	BRUNOL4 Chr:18q12
109	120	G322 G323 G324	223529_at	SYT4 Chr:18q12.3
110	182	G322 G323 G324	236448_at	UNC5A Chr:5q35.3
111	38	G322 G323 G324	204722_at	SCN3B Chr:11q24.1
112	39	G322 G323 G324	204723_at	SCN3B Chr:11q24.1
113	27	G322 G323 G324	204134_at	PDE2A Chr:11q13.3
114	57	G322 G323 G324	206196_s_at	RPIP8 Chr:17q21.31
115	97	G322 G323 G324	214874_at	PKP4 Chr:2q23-q31
116	135	G322 G323 G324	227641_at	MGC33974 Chr:16p13.3
117	17	G322 G323 G324	202260_s_at	STXBP1 Chr:9q34.1
118	19	G322 G323 G324	202712_s_at	CKMT1 Chr:15q15
119	70	G322 G323 G324	210016_at	MYT1L Chr:2p25.3
120	119	G322 G323 G324	223500_at	CPLX1 Chr:4p16.3
121	6	G322 G323 G324	1555958_at	CRTAC1 Chr:10q22
122	32	G322 G323 G324	204465_s_at	INA Chr:10q24.33
123	54	G322 G323 G324	206013_s_at	ACTL6 Chr:7q22
124	104	G322 G323 G324	218623_at	HMP19 Chr:5q35.2
125	149	G322 G323 G324	229300_at	--- ---
126	43	G322 G323 G324	204763_s_at	GNAO1 Chr:16q13
127	100	G322 G323 G324	215116_s_at	DNM1 Chr:9q34
128	148	G322 G323 G324	229294_at	JPH3 Chr:16q24.3
129	89	G322 G323 G324	214098_at	KIAA1107 Chr:1p22.1
130	176	G322 G323 G324	235066_at	MAP4 Chr:3p21
131	92	G322 G323 G324	214230_at	CDC42 Chr:1p36.1
132	206	G322 G323 G324	242999_at	ARHGEF7 Chr:13q34
133	125	G322 G323 G324	224801_at	NDFIP2 Chr:13q22.2
134	154	G322 G323 G324	230238_at	LOC134548 Chr:5q31.1
135	143	G322 G323 G324	229029_at	--- ---
136	168	G322 G323 G324	231986_at	RIMS1 Chr:6q12-q13
137	207	G322 G323 G324	243163_at	--- ---
138	123	G323 G324	224209_s_at	GDA Chr:9q21.11-21.33
139	22	G323 G324	203798_s_at	VSNL1 Chr:2p24.3
140	21	G323 G324	203797_at	VSNL1 Chr:2p24.3
141	132	G323 G324	227226_at	C6orf117 Chr:6q15
142	91	G323 G324	214157_at	GNAS Chr:20q13.2-q13.3
143	58	G323 G324	206290_s_at	RGS7 Chr:1q43
144	86	G323 G324	213938_at	CAST Chr:3p21.31
145	74	G323 G324	210721_s_at	PAK7 Chr:20p12
146	175	G323 G324	234303_s_at	GPR85 Chr:7q31
147	36	G323 G324	204675_at	SRD5A1 Chr:5p15
148	76	G323 G324	213040_s_at	NPTXR Chr:22q13.1
149	84	G323 G324	213904_at	--- ---
150	118	G323 G324	223362_s_at	38233 Chr:22q13.2
151	158	G323 G324	230497_at	BRUNOL5 Chr:19p13
152	130	G323 G324	226864_at	PKIA Chr:8q21.11
153	180	G323 G324	236024_at	GPM6A Chr:4q34
154	203	G323 G324	242193_at	--- Chr:8q12.3
155	90	G323 G324	214111_at	OPCML Chr:11q25
156	178	G323 G324	235230_at	--- ---
157	162	G323 G324	230932_at	--- ---
158	195	G323 G324	239671_at	--- ---
159	52	G323 G324	205818_at	DBC1 Chr:9q32-q33
160	98	G323 G324	214945_at	NY-REN-7 Chr:5q35.3
161	33	G323 G324	204513_s_at	ELMO1 Chr:7p14.1
162	35	G323 G324	204584_at	L1CAM Chr:xq28
163	7	G323 G324	1556047_s_at	KIAA1587 Chr:xq13.2
164	42	G323 G324	204743_at	NP25 Chr:3q13.13-q13.2
165	4	G323 G324	1554007_at	--- ---
166	93	G323 G324	214376_at	--- ---
167	66	G323 G324	209583_s_at	MOX2 Chr:3q12-q13
168	45	G323 G324	204953_at	SNAP91 Chr:6q15
169	164	G323 G324	231325_at	UNC5D Chr:8p12-p11.23
170	115	G323 G324	221792_at	--- ---
171	192	G323 G324	239293_at	VMP Chr:6p22.1
172	80	G323 G324	213280_at	GARNL4 Chr:17p13.3
173	29	G323 G324	204260_at	CHGB Chr:20pter-p12
174	151	G323 G324	229823_at	--- ---
175	62	G323 G324	206552_s_at	TAC1 Chr:7q21-q22
176	155	G323 G324	230255_at	GABRD Chr:1p36.3
177	103	G323 G324	216086_at	SV2C Chr:5q13.3
178	199	G323 G324	241382_at	--- ---
179	77	G323 G324	213122_at	TSPYL5 Chr:8q22.1
180	212	G323 G324	244680_at	GLRB Chr:4q31.3
181	179	G323 G324	235486_at	MGC34830 Chr:11p13
182	95	G323 G324	214762_at	ATP6V1G2 Chr:6p21.3
183	20	G324	203159_at	GLS Chr:2q32-q34
184	41	G324	204730_at	RIMS3 Chr:1pter-p22.2
185	49	G324	205551_at	SV2B Chr:15q26.1
186	188	G324	238673_at	--- ---
187	145	G324	229057_at	--- ---
188	166	G324	231771_at	GJB6 Chr:13q12
189	60	G324	206382_s_at	BDNF Chr:11p13
190	105	G324	218720_x_at	PSK-1 Chr:16p12.1
191	75	G324	212473_s_at	MICAL2 Chr:11p15.3
192	88	G324	214046_at	--- ---
193	140	G324	228194_s_at	SORCS1 Chr:10q23-q25
194	69	G324	209982_s_at	NRXN2 Chr:11q13
195	78	G324	213172_at	TTC9 Chr:14q24.1
196	101	G324	215241_at	TMEM16C Chr:11p14.3
197	134	G324	227365_at	ATCAY Chr:19p13.3
198	184	G324	236656_s_at	--- ---
199	189	G324	238727_at	--- ---
200	67	G324	209683_at	DKFZP566A1524 Chr:2p24.3
201	83	G324	213386_at	--- ---
202	117	G324	223340_at	SPG3A Chr:14q22.1
203	157	G324	230287_at	RUTBC2 Chr:22q11.23
204	163	G324	231166_at	GPR155 Chr:2q31.1
205	196	G324	239678_at	--- ---
206	102	G324	215307_at	--- ---
207	107	G324	219368_at	NAP1L2 Chr:xq13
208	142	G324	228414_at	LOC142955 Chr:10q22.3
209	173		233139_at	--- ---
210	181		236166_at	LOC285147 Chr:2p25.2
211	81		213307_at	SHANK2 Chr:11q13.2
212	82		213308_at	SHANK2 Chr:11q13.2
213	209		243681_at	SHANK2 Chr:11q13.2

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:08:05

G21_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC