G20_using_S1

Super-paramagnetic Clustering of 24 points in a 84 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=4)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    116 231109_at--- ---
    23 209023_s_atSTAG2 Chr:xq25
    35 212762_s_atTCF7L2 Chr:10q25.3
    410 222787_s_atFLJ11273 Chr:7p21.3
    515 228471_atLOC91526 Chr:2q33.1
    621 243149_at--- ---
    719 241060_x_at--- ---
    817 235803_at--- ---
    924 244112_x_at--- ---
    1022 243240_at--- ---
    1118 236251_at--- ---
    121 1559391_s_at--- ---
    137 213684_s_atLIM Chr:4q22
    1411 223079_s_atGLS Chr:2q32-q34
    1513 224828_atCPEB4 Chr:5q21
    1614 224829_atCPEB4 Chr:5q21
    1723 244045_at--- ---
    1820 242579_at--- ---
    192 204964_s_atSSPN Chr:12p11.2
    208 213998_s_atDDX17 Chr:22q13.1
    2112 223185_s_atBHLHB3 Chr:12p11.23-p12.1
    226 212993_at--- ---
    234 212249_atPIK3R1 Chr:5q13.1
    249 215342_s_atHHL Chr:1q24

    Samples Names

    125161.cel
    233211.cel
    3111357.cel
    4291795R.cel
    5311869RR.cel
    66655.cel
    718148.cel
    8211553.cel
    941076.cel
    10281780.cel
    112104.cel
    12101317.cel
    13512.cel
    143106.cel
    15141430.cel
    1665547.cel
    1771574.cel
    187129.cel
    1941269.cel
    20131399.cel
    217570.cel
    22191497R.cel
    2342274.cel
    2423157.cel
    2553356bis.cel
    26301854R.cel
    278194bis.cel
    287990.cel
    29151437.cel
    3091308.cel
    3132190.cel
    3243283.cel
    331100R.cel
    3451345.cel
    352015.cel
    367680.cel
    3747300.cel
    388093.cel
    3939246.cel
    4040254.cel
    4137236.cel
    4245288.cel
    4357428.cel
    4422155R.cel
    4554360.cel
    4669566.cel
    47161453.cel
    48261621.cel
    4944284.cel
    5049328.cel
    51121360.cel
    5252349.cel
    53271622R.cel
    5435218.cel
    5558444.cel
    5638242.cel
    5755390.cel
    5861506.cel
    5962527.cel
    6068563.cel
    6124159.cel
    624630.cel
    6384ge205.cel
    6459458.cel
    6567558.cel
    6650344.cel
    6760461.cel
    687783.cel
    6917147.cel
    7036222.cel
    7161284.cel
    7256396.cel
    737057.cel
    748297.cel
    7548323.cel
    767465R.cel
    777884.cel
    7883ge197.cel
    7963528bis.cel
    807363.cel
    8181297.cel
    8264534.cel
    8334212R.cel
    847257R.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)4
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 02:57:24