G19_using_S6

Super-paramagnetic Clustering of 80 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	70		238498_at	--- ---
2	8		202890_at	MAP7 Chr:6q23.2
3	50		225822_at	MGC17299 Chr:1p34.1
4	31		213371_at	LDB3 Chr:10q22.3-q23.2
5	26		210944_s_at	CAPN3 Chr:15q15.1-q21.1
6	33		214475_x_at	CAPN3 Chr:15q15.1-q21.1
7	28		211890_x_at	CAPN3 Chr:15q15.1-q21.1
8	21	G318 G319 G320	207659_s_at	MOBP Chr:3p21.33
9	74	G318 G319 G320	241717_at	LOC285281 Chr:3p21.33
10	66	G318 G319 G320	235794_at	MOBP Chr:3p21.33
11	42	G318 G319 G320	219750_at	FLJ11155 Chr:4q32.1
12	4	G318 G319 G320	1557943_at	CNP Chr:17q21
13	44	G318 G319 G320	221868_at	KIAA1155 Chr:2p13.2
14	69	G318 G319 G320	238008_at	MGC35308 Chr:6q27
15	77	G318 G319 G320	242002_at	TCBA1 Chr:6q21
16	1	G318 G319 G320	1553765_a_at	KIAA1900 Chr:6q16.3
17	27	G318 G319 G320	211836_s_at	MOG Chr:6p22-p21.3
18	14	G318 G319 G320	204733_at	KLK6 Chr:19q13.3
19	2	G318 G319 G320	1555807_a_at	MOG Chr:6p22-p21.3
20	18	G318 G319 G320	205989_s_at	MOG Chr:6p22-p21.3
21	34	G318 G319 G320	214650_x_at	MOG Chr:6p22-p21.3
22	7	G318 G319 G320	1565809_x_at	--- Chr:1p36.33
23	30	G318 G319 G320	212829_at	--- ---
24	37	G318 G319 G320	218094_s_at	C20orf35 Chr:20q13.12
25	15	G318 G319 G320	204777_s_at	MAL Chr:2cen-q13
26	78	G318 G319 G320	242765_at	MOBP Chr:3p21.33
27	61	G318 G319 G320	232388_at	CNTNAP4 Chr:16q23.1
28	20	G318 G319 G320	207323_s_at	MBP Chr:18q23
29	47	G318 G319 G320	223699_at	CNDP1 Chr:18q22.3
30	22	G318 G319 G320	209072_at	MBP Chr:18q23
31	38	G318 G319 G320	218469_at	GREM1 Chr:15q13-q15
32	10	G318 G319 G320	204378_at	BCAS1 Chr:20q13.2-q13.3
33	52	G318 G319 G320	227006_at	PPP1R14A Chr:19q13.1
34	71	G318 G319 G320	239575_at	TMEM10 Chr:10q23-q24
35	39	G318 G319 G320	218651_s_at	FLJ11196 Chr:15q22.32
36	6	G319 G320	1562608_at	--- ---
37	56	G319 G320	228624_at	FLJ11155 Chr:4q32.1
38	25	G319 G320	210657_s_at	PNUTL2 Chr:17q22-q23
39	64	G319 G320	235342_at	SPOCK3 Chr:4q32.3
40	67	G319 G320	236420_s_at	TMEM16D Chr:12q23.3
41	59	G319 G320	230104_s_at	p25 Chr:5p15.3
42	49	G319 G320	225727_at	PLEKHH1 Chr:14q24.1
43	60	G319 G320	231911_at	KIAA1189 Chr:2q24.2
44	3	G319 G320	1557481_a_at	--- ---
45	36	G319 G320	217613_at	FLJ11155 Chr:4q32.1
46	43	G319 G320	220026_at	CLCA4 Chr:1p31-p22
47	24	G319 G320	210193_at	MOBP Chr:3p21.33
48	58	G319 G320	229781_at	--- ---
49	65	G319 G320	235476_at	TSBF1 Chr:3q26.1
50	76	G319 G320	241873_at	UNC5C Chr:4q21-q23
51	19	G319 G320	207308_at	SLCO1A2 Chr:12p12
52	12	G320	204547_at	RAB40B Chr:17q25.3
53	5	G320	1562473_at	--- ---
54	13	G320	204681_s_at	RAPGEF5 Chr:7p15.3
55	75	G320	241833_at	--- ---
56	45	G320	222862_s_at	AK5 Chr:1p31
57	16	G320	205637_s_at	SH3GL3 Chr:15q24
58	17	G320	205814_at	GRM3 Chr:7q21.1-q21.2
59	72	G320	240053_x_at	--- ---
60	48	G320	224482_s_at	RAB11-FIP4 Chr:17q11.2
61	57	G320	228891_at	LOC349236 Chr:9q22.2
62	35	G320	214769_at	CLCN4 Chr:Xp22.3
63	11		204467_s_at	SNCA Chr:4q21
64	80		41577_at	PPP1R16B Chr:20q12
65	29		212750_at	PPP1R16B Chr:20q12
66	40		219305_x_at	FBXO2 Chr:1p36.21
67	79		244113_at	--- ---
68	53		227439_at	EB-1 Chr:12q23.1-q23.2
69	55		227441_s_at	EB-1 Chr:12q23.1-q23.2
70	51		226018_at	Ells1 Chr:7p15.1
71	54		227440_at	EB-1 Chr:12q23.1-q23.2
72	62		234261_at	--- ---
73	68		236838_at	--- ---
74	73		240292_x_at	EB-1 Chr:12q23.1-q23.2
75	9		204073_s_at	C11orf9 Chr:11q12-q13.1
76	41		219429_at	FA2H Chr:16q23
77	23		210169_at	KIAA0420 Chr:16p13.3
78	46		223572_at	KIAA1173 Chr:3p21.33
79	63		235236_at	--- ---
80	32		213839_at	KIAA0500 Chr:14q32.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:56:16

G19_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC