G19_using_S5

Super-paramagnetic Clustering of 80 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	8		202890_at	MAP7 Chr:6q23.2
2	70		238498_at	--- ---
3	50		225822_at	MGC17299 Chr:1p34.1
4	31		213371_at	LDB3 Chr:10q22.3-q23.2
5	11		204467_s_at	SNCA Chr:4q21
6	80		41577_at	PPP1R16B Chr:20q12
7	29		212750_at	PPP1R16B Chr:20q12
8	79		244113_at	--- ---
9	40		219305_x_at	FBXO2 Chr:1p36.21
10	10	G317	204378_at	BCAS1 Chr:20q13.2-q13.3
11	19	G317	207308_at	SLCO1A2 Chr:12p12
12	47	G316 G317	223699_at	CNDP1 Chr:18q22.3
13	22	G316 G317	209072_at	MBP Chr:18q23
14	60	G316 G317	231911_at	KIAA1189 Chr:2q24.2
15	6	G314 G315 G316 G317	1562608_at	--- ---
16	56	G314 G315 G316 G317	228624_at	FLJ11155 Chr:4q32.1
17	66	G314 G315 G316 G317	235794_at	MOBP Chr:3p21.33
18	49	G314 G315 G316 G317	225727_at	PLEKHH1 Chr:14q24.1
19	77	G314 G315 G316 G317	242002_at	TCBA1 Chr:6q21
20	74	G314 G315 G316 G317	241717_at	LOC285281 Chr:3p21.33
21	44	G314 G315 G316 G317	221868_at	KIAA1155 Chr:2p13.2
22	20	G314 G315 G316 G317	207323_s_at	MBP Chr:18q23
23	71	G314 G315 G316 G317	239575_at	TMEM10 Chr:10q23-q24
24	2	G314 G315 G316 G317	1555807_a_at	MOG Chr:6p22-p21.3
25	30	G314 G315 G316 G317	212829_at	--- ---
26	15	G314 G315 G316 G317	204777_s_at	MAL Chr:2cen-q13
27	23	G314 G315 G316 G317	210169_at	KIAA0420 Chr:16p13.3
28	78	G314 G315 G316 G317	242765_at	MOBP Chr:3p21.33
29	61	G314 G315 G316 G317	232388_at	CNTNAP4 Chr:16q23.1
30	4	G314 G315 G316 G317	1557943_at	CNP Chr:17q21
31	21	G314 G315 G316 G317	207659_s_at	MOBP Chr:3p21.33
32	14	G314 G315 G316 G317	204733_at	KLK6 Chr:19q13.3
33	18	G314 G315 G316 G317	205989_s_at	MOG Chr:6p22-p21.3
34	7	G314 G315 G316 G317	1565809_x_at	--- Chr:1p36.33
35	27	G314 G315 G316 G317	211836_s_at	MOG Chr:6p22-p21.3
36	34	G314 G315 G316 G317	214650_x_at	MOG Chr:6p22-p21.3
37	69	G314 G315 G316 G317	238008_at	MGC35308 Chr:6q27
38	1	G314 G315 G316 G317	1553765_a_at	KIAA1900 Chr:6q16.3
39	42	G314 G315 G316 G317	219750_at	FLJ11155 Chr:4q32.1
40	25	G314 G315 G316 G317	210657_s_at	PNUTL2 Chr:17q22-q23
41	26	G315 G316 G317	210944_s_at	CAPN3 Chr:15q15.1-q21.1
42	28	G315 G316 G317	211890_x_at	CAPN3 Chr:15q15.1-q21.1
43	33	G315 G316 G317	214475_x_at	CAPN3 Chr:15q15.1-q21.1
44	3	G315 G316 G317	1557481_a_at	--- ---
45	36	G315 G316 G317	217613_at	FLJ11155 Chr:4q32.1
46	24	G315 G316 G317	210193_at	MOBP Chr:3p21.33
47	43	G315 G316 G317	220026_at	CLCA4 Chr:1p31-p22
48	58	G315 G316 G317	229781_at	--- ---
49	65	G315 G316 G317	235476_at	TSBF1 Chr:3q26.1
50	52	G315 G316 G317	227006_at	PPP1R14A Chr:19q13.1
51	38	G316 G317	218469_at	GREM1 Chr:15q13-q15
52	5	G317	1562473_at	--- ---
53	39	G317	218651_s_at	FLJ11196 Chr:15q22.32
54	13	G317	204681_s_at	RAPGEF5 Chr:7p15.3
55	17	G317	205814_at	GRM3 Chr:7q21.1-q21.2
56	12	G317	204547_at	RAB40B Chr:17q25.3
57	46	G317	223572_at	KIAA1173 Chr:3p21.33
58	64	G317	235342_at	SPOCK3 Chr:4q32.3
59	59	G317	230104_s_at	p25 Chr:5p15.3
60	16	G317	205637_s_at	SH3GL3 Chr:15q24
61	75	G317	241833_at	--- ---
62	45	G317	222862_s_at	AK5 Chr:1p31
63	48	G317	224482_s_at	RAB11-FIP4 Chr:17q11.2
64	72	G317	240053_x_at	--- ---
65	76	G317	241873_at	UNC5C Chr:4q21-q23
66	35	G317	214769_at	CLCN4 Chr:Xp22.3
67	32	G317	213839_at	KIAA0500 Chr:14q32.2
68	67	G317	236420_s_at	TMEM16D Chr:12q23.3
69	68	G317	236838_at	--- ---
70	51	G317	226018_at	Ells1 Chr:7p15.1
71	63	G317	235236_at	--- ---
72	53		227439_at	EB-1 Chr:12q23.1-q23.2
73	54		227440_at	EB-1 Chr:12q23.1-q23.2
74	55		227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62		234261_at	--- ---
76	73		240292_x_at	EB-1 Chr:12q23.1-q23.2
77	9		204073_s_at	C11orf9 Chr:11q12-q13.1
78	41		219429_at	FA2H Chr:16q23
79	57		228891_at	LOC349236 Chr:9q22.2
80	37		218094_s_at	C20orf35 Chr:20q13.12

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:53:26

G19_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC