G19_using_S4

Super-paramagnetic Clustering of 80 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	50		225822_at	MGC17299 Chr:1p34.1
2	31		213371_at	LDB3 Chr:10q22.3-q23.2
3	10		204378_at	BCAS1 Chr:20q13.2-q13.3
4	9		204073_s_at	C11orf9 Chr:11q12-q13.1
5	41		219429_at	FA2H Chr:16q23
6	19	G313	207308_at	SLCO1A2 Chr:12p12
7	13	G313	204681_s_at	RAPGEF5 Chr:7p15.3
8	17	G313	205814_at	GRM3 Chr:7q21.1-q21.2
9	46	G313	223572_at	KIAA1173 Chr:3p21.33
10	64	G313	235342_at	SPOCK3 Chr:4q32.3
11	75	G313	241833_at	--- ---
12	16	G313	205637_s_at	SH3GL3 Chr:15q24
13	5	G313	1562473_at	--- ---
14	12	G313	204547_at	RAB40B Chr:17q25.3
15	67	G313	236420_s_at	TMEM16D Chr:12q23.3
16	11	G313	204467_s_at	SNCA Chr:4q21
17	4	G312 G313	1557943_at	CNP Chr:17q21
18	22	G312 G313	209072_at	MBP Chr:18q23
19	1	G312 G313	1553765_a_at	KIAA1900 Chr:6q16.3
20	21	G311 G312 G313	207659_s_at	MOBP Chr:3p21.33
21	66	G311 G312 G313	235794_at	MOBP Chr:3p21.33
22	77	G311 G312 G313	242002_at	TCBA1 Chr:6q21
23	23	G311 G312 G313	210169_at	KIAA0420 Chr:16p13.3
24	74	G311 G312 G313	241717_at	LOC285281 Chr:3p21.33
25	78	G311 G312 G313	242765_at	MOBP Chr:3p21.33
26	15	G311 G312 G313	204777_s_at	MAL Chr:2cen-q13
27	20	G311 G312 G313	207323_s_at	MBP Chr:18q23
28	24	G311 G312 G313	210193_at	MOBP Chr:3p21.33
29	3	G311 G312 G313	1557481_a_at	--- ---
30	43	G311 G312 G313	220026_at	CLCA4 Chr:1p31-p22
31	71	G311 G312 G313	239575_at	TMEM10 Chr:10q23-q24
32	36	G311 G312 G313	217613_at	FLJ11155 Chr:4q32.1
33	44	G311 G312 G313	221868_at	KIAA1155 Chr:2p13.2
34	60	G311 G312 G313	231911_at	KIAA1189 Chr:2q24.2
35	6	G312 G313	1562608_at	--- ---
36	2	G312 G313	1555807_a_at	MOG Chr:6p22-p21.3
37	27	G312 G313	211836_s_at	MOG Chr:6p22-p21.3
38	30	G312 G313	212829_at	--- ---
39	14	G312 G313	204733_at	KLK6 Chr:19q13.3
40	26	G312 G313	210944_s_at	CAPN3 Chr:15q15.1-q21.1
41	18	G312 G313	205989_s_at	MOG Chr:6p22-p21.3
42	28	G312 G313	211890_x_at	CAPN3 Chr:15q15.1-q21.1
43	33	G312 G313	214475_x_at	CAPN3 Chr:15q15.1-q21.1
44	56	G312 G313	228624_at	FLJ11155 Chr:4q32.1
45	34	G312 G313	214650_x_at	MOG Chr:6p22-p21.3
46	7	G312 G313	1565809_x_at	--- Chr:1p36.33
47	47	G312 G313	223699_at	CNDP1 Chr:18q22.3
48	61	G312 G313	232388_at	CNTNAP4 Chr:16q23.1
49	42	G312 G313	219750_at	FLJ11155 Chr:4q32.1
50	72	G312 G313	240053_x_at	--- ---
51	49	G312 G313	225727_at	PLEKHH1 Chr:14q24.1
52	65	G312 G313	235476_at	TSBF1 Chr:3q26.1
53	45	G312 G313	222862_s_at	AK5 Chr:1p31
54	52	G313	227006_at	PPP1R14A Chr:19q13.1
55	69	G313	238008_at	MGC35308 Chr:6q27
56	58	G313	229781_at	--- ---
57	25	G313	210657_s_at	PNUTL2 Chr:17q22-q23
58	39	G313	218651_s_at	FLJ11196 Chr:15q22.32
59	35	G313	214769_at	CLCN4 Chr:Xp22.3
60	76	G313	241873_at	UNC5C Chr:4q21-q23
61	38	G313	218469_at	GREM1 Chr:15q13-q15
62	57	G313	228891_at	LOC349236 Chr:9q22.2
63	63	G313	235236_at	--- ---
64	32		213839_at	KIAA0500 Chr:14q32.2
65	29		212750_at	PPP1R16B Chr:20q12
66	80		41577_at	PPP1R16B Chr:20q12
67	40		219305_x_at	FBXO2 Chr:1p36.21
68	79		244113_at	--- ---
69	48		224482_s_at	RAB11-FIP4 Chr:17q11.2
70	54		227440_at	EB-1 Chr:12q23.1-q23.2
71	55		227441_s_at	EB-1 Chr:12q23.1-q23.2
72	73		240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53		227439_at	EB-1 Chr:12q23.1-q23.2
74	62		234261_at	--- ---
75	51		226018_at	Ells1 Chr:7p15.1
76	68		236838_at	--- ---
77	59		230104_s_at	p25 Chr:5p15.3
78	37		218094_s_at	C20orf35 Chr:20q13.12
79	8		202890_at	MAP7 Chr:6q23.2
80	70		238498_at	--- ---

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:50:23

G19_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC