G19_using_S3

Super-paramagnetic Clustering of 80 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	1		1553765_a_at	KIAA1900 Chr:6q16.3
2	17		205814_at	GRM3 Chr:7q21.1-q21.2
3	10		204378_at	BCAS1 Chr:20q13.2-q13.3
4	36		217613_at	FLJ11155 Chr:4q32.1
5	67		236420_s_at	TMEM16D Chr:12q23.3
6	38		218469_at	GREM1 Chr:15q13-q15
7	16	G310	205637_s_at	SH3GL3 Chr:15q24
8	23	G310	210169_at	KIAA0420 Chr:16p13.3
9	18	G310	205989_s_at	MOG Chr:6p22-p21.3
10	32	G310	213839_at	KIAA0500 Chr:14q32.2
11	6	G310	1562608_at	--- ---
12	7	G310	1565809_x_at	--- Chr:1p36.33
13	14	G310	204733_at	KLK6 Chr:19q13.3
14	15	G310	204777_s_at	MAL Chr:2cen-q13
15	20	G310	207323_s_at	MBP Chr:18q23
16	30	G310	212829_at	--- ---
17	3	G310	1557481_a_at	--- ---
18	31	G310	213371_at	LDB3 Chr:10q22.3-q23.2
19	33	G310	214475_x_at	CAPN3 Chr:15q15.1-q21.1
20	41	G310	219429_at	FA2H Chr:16q23
21	50	G310	225822_at	MGC17299 Chr:1p34.1
22	49	G310	225727_at	PLEKHH1 Chr:14q24.1
23	56	G310	228624_at	FLJ11155 Chr:4q32.1
24	66	G310	235794_at	MOBP Chr:3p21.33
25	4	G310	1557943_at	CNP Chr:17q21
26	8	G310	202890_at	MAP7 Chr:6q23.2
27	27	G310	211836_s_at	MOG Chr:6p22-p21.3
28	28	G310	211890_x_at	CAPN3 Chr:15q15.1-q21.1
29	2	G310	1555807_a_at	MOG Chr:6p22-p21.3
30	34	G310	214650_x_at	MOG Chr:6p22-p21.3
31	52	G310	227006_at	PPP1R14A Chr:19q13.1
32	47	G310	223699_at	CNDP1 Chr:18q22.3
33	37	G310	218094_s_at	C20orf35 Chr:20q13.12
34	40	G310	219305_x_at	FBXO2 Chr:1p36.21
35	22	G310	209072_at	MBP Chr:18q23
36	25	G310	210657_s_at	PNUTL2 Chr:17q22-q23
37	69	G310	238008_at	MGC35308 Chr:6q27
38	21	G310	207659_s_at	MOBP Chr:3p21.33
39	42	G310	219750_at	FLJ11155 Chr:4q32.1
40	9	G310	204073_s_at	C11orf9 Chr:11q12-q13.1
41	70	G310	238498_at	--- ---
42	78	G310	242765_at	MOBP Chr:3p21.33
43	26	G310	210944_s_at	CAPN3 Chr:15q15.1-q21.1
44	53	G310	227439_at	EB-1 Chr:12q23.1-q23.2
45	57	G310	228891_at	LOC349236 Chr:9q22.2
46	60	G310	231911_at	KIAA1189 Chr:2q24.2
47	58	G310	229781_at	--- ---
48	39	G310	218651_s_at	FLJ11196 Chr:15q22.32
49	43	G310	220026_at	CLCA4 Chr:1p31-p22
50	65	G310	235476_at	TSBF1 Chr:3q26.1
51	44	G310	221868_at	KIAA1155 Chr:2p13.2
52	74	G310	241717_at	LOC285281 Chr:3p21.33
53	63	G310	235236_at	--- ---
54	54	G310	227440_at	EB-1 Chr:12q23.1-q23.2
55	73	G310	240292_x_at	EB-1 Chr:12q23.1-q23.2
56	48	G310	224482_s_at	RAB11-FIP4 Chr:17q11.2
57	51	G310	226018_at	Ells1 Chr:7p15.1
58	45	G310	222862_s_at	AK5 Chr:1p31
59	59	G310	230104_s_at	p25 Chr:5p15.3
60	62	G310	234261_at	--- ---
61	55		227441_s_at	EB-1 Chr:12q23.1-q23.2
62	61		232388_at	CNTNAP4 Chr:16q23.1
63	19		207308_at	SLCO1A2 Chr:12p12
64	64		235342_at	SPOCK3 Chr:4q32.3
65	12		204547_at	RAB40B Chr:17q25.3
66	46		223572_at	KIAA1173 Chr:3p21.33
67	13		204681_s_at	RAPGEF5 Chr:7p15.3
68	29		212750_at	PPP1R16B Chr:20q12
69	79		244113_at	--- ---
70	5		1562473_at	--- ---
71	80		41577_at	PPP1R16B Chr:20q12
72	71		239575_at	TMEM10 Chr:10q23-q24
73	24		210193_at	MOBP Chr:3p21.33
74	68		236838_at	--- ---
75	35		214769_at	CLCN4 Chr:Xp22.3
76	72		240053_x_at	--- ---
77	75		241833_at	--- ---
78	77		242002_at	TCBA1 Chr:6q21
79	11		204467_s_at	SNCA Chr:4q21
80	76		241873_at	UNC5C Chr:4q21-q23

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	20
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:47:28

G19_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC